| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_4583 |
|---|
| Symbol | ldhA |
|---|
| ID | 5357605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 4706776 |
|---|
| End bp | 4707765 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640813630 |
|---|
| Product | D-lactate dehydrogenase (fermentative) |
|---|
| Protein accession | YP_001349931 |
|---|
| Protein GI | 152985530 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCC TGTTCTTCAG CAGCCAGGCC TACGACAGCG AGAGCTTCCA GGCCAGCAAC
CACCGGCACG GCTTCGAGCT GCACTTCCAG CAGGCCCACC TGCAGGCGGA CACGGCGCTC
CTCGCCCAGG GTTTCGAGGT AGTCTGCGCC TTCGTCAACG ACGACCTCTC GCGGCCGGTG
CTGGAACGCC TGGCCGCCGG CGGCACGCGC CTGGTCGCCC TGCGCTCGGC CGGCTACAAC
CATGTCGACC TGGCCGCCGC CGAAGCCCTC GGCCTGCCGG TGGTGCACGT GCCGGCCTAC
TCGCCGCACG CCGTCGCCGA ACACGCGGTC GGCCTGATCC TGACGCTCAA CCGGCGGCTG
CACCGCGCCT ACAACCGGAC CCGCGAGGGC GACTTCTCGC TGCACGGGCT GACCGGCTTC
GACCTGCACG GCAAGCGCGT GGGAGTGATC GGCACCGGAC AGATCGGCGA GACCTTCGCC
CGCATCATGG CCGGCTTCGG CTGTGAACTG CTGGCCTACG ACCCCTACCC CAACCCCCGG
GTCGAAGCGC TCGGCGGCCG CTATCCGGGC CTCGACACGC TGCTCGCCGA GTCCGACATC
GTCAGCCTGC ATTGTCCGCT GAGCGCCGAG ACCCGCCATC TCATCGATGC CCGTCGCCTG
GCGGCGATGA AACGTGGCGC CATGCTGATC AACACCGGGC GTGGCGCCCT GGTGGACGCC
GCCGCGCTGA TCGAGGCGCT GAAGAGTGGC CAGCTGGGCT ACCTCGGCCT CGATGTCTAT
GAAGAAGAAG CGGACATCTT CTTCGAGGAC CGCTCCGACC AGCCCCTGCA GGACGACGTG
CTGGCACGCC TGCTGAGCTT CCCCAACGTG GTGGTGACCG CCCACCAGGC CTTCCTCACC
CGCGAGGCCC TGGCGGCGAT CGCCGATACC ACCCTGGACA ACATCGCCGC CTGGCAGGAC
GGGACGCCTC GCAATCGGGT CAGGGCCTGA
|
|---|
| Protein sequence | MRILFFSSQA YDSESFQASN HRHGFELHFQ QAHLQADTAL LAQGFEVVCA FVNDDLSRPV
LERLAAGGTR LVALRSAGYN HVDLAAAEAL GLPVVHVPAY SPHAVAEHAV GLILTLNRRL
HRAYNRTREG DFSLHGLTGF DLHGKRVGVI GTGQIGETFA RIMAGFGCEL LAYDPYPNPR
VEALGGRYPG LDTLLAESDI VSLHCPLSAE TRHLIDARRL AAMKRGAMLI NTGRGALVDA
AALIEALKSG QLGYLGLDVY EEEADIFFED RSDQPLQDDV LARLLSFPNV VVTAHQAFLT
REALAAIADT TLDNIAAWQD GTPRNRVRA
|
|---|
| |