| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3949 |
|---|
| Symbol | |
|---|
| ID | 5358274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 4090049 |
|---|
| End bp | 4092124 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640812999 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001349303 |
|---|
| Protein GI | 152985704 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.809054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCGC CAGCCAATAG TGCGCACTTT GCGCTATCGA TCCCCTCCGT ACGCAACGAC
TTCAAGGTGC TGGCTTTCGA TGGCACCGAA GCCATCAGCA CCCTTTATTC CATCCGCATC
GAACTGCTCA GCGAGAACCC CGATTTCGAC CTGGAGGGTT TGCTCGGTCA ACCGGCGTTT
CTCCAGTTCG GCCTGAGCGG CGAAGGGATC CATGGGCATA TCGAAGACGT GTACGTGGGC
GAAGCCGGTA GGCGCCTGGC GCGCTATCAC CTGACCCTGG TGCCGGTATT GCACTACCTG
CAGTTCAGCT TCAACCAGCG CATTTTCCAG CACCTGACAG TACCGCAGAT CATCGCCCAG
GTGCTGGCAG GCCATGGTAT CCAGCCTGAT GTCTACGTCT TCAATGTCCA CACCAGCCCG
GAACGCGAAT ACTGCACTCA GTACGGTGAA AGTGATTTCG ATTTCATCCA ACGGCTGTGT
GCAGAGGACG GCATCGCTTG GCACCACCAG CATTCAGCGG ATACTCACCT GCTGGTGTTT
ACCGAGGACC AGGCCTGGTT CCCCTTGCTG GGATGTACGC CATACCGCCA GGATACTGGG
ACGGTCGCCG ATCATCCGGT GGTCAATCGG TTTTCCCAGC GTTTCAGTTC CCGCACCAGC
AAGGTGACTC GCCGCGACTA CGACCTGAAG CGGCCAAGCC TGTTGCTGGA AAGCCAGTTC
ACCGCGGAGT TCGAGCCGGC CCTCGAGGAC TATCGTTATC CTTCGCCGAT CACCACGCTG
GAGCGTGGGC AGGTGTTGGC CAGACAGGCT CTGGAACGGC ATCGTGTCGA TTACCAGCTG
GCCGAAGGCC AGAGCGATCA GCCGACGTTG CGCAGCGGTC ACTTCTTCAA GCTGACCGAA
CATCCGCGCA AGACATGCAA CGAACTGTGG TTGTTGCTGA GCGTCACGCA CTCTGGTCGG
CAACCCCAGT CACTCGAAGA GTCCGTGCCC GGCGATAGCC AGGCAGAAGA CCGCTTCACC
CAGGGTTATC GCAATACCTT CACCGCCATT CCATGGGATG TGTTTTTCCG GCCGCCGCTG
CTGACGCGCA GGCCCCTGCC GGGATGCCAG ACCGCTCGGG TCACCGGTCC GGCCGGCGAG
GAAGTCTTCT GTGATGAATA CGGGCGGGTG AAGGTCGAAC TACATTGGGA CAGACGGGAA
CTGGGAAGCG ACAAAAGCAG TTGCTGGCTG CGGGTTGCTT CCAGTTGGGC AGGTGAGCGT
TTCGGCGCGG TGACCATCCC GCGCATTGGC ATGGAAGTGG TGGTGAGCTT CCTCGAAGGC
AACCCGGACT GCCCGTTGAT TACCGGTGTC GTGCCGAACA AGACCACACC TGTTCCCTAC
GCGCTGCCGG CGAACAAAAG CAGAACCGTA TTACGTAGTC GAAGTACGCC GAACAGCGGC
GGCTACAACG AACTTTCGAT CGAAGACCGG GCAGGCCAGG AAAAGATCTT CCTGCGCGCG
CAGCGTGATA TCGAGCAACT GATCCTCAAC GACAGTCACA CCAGCATCGG CAATGACCGT
CACGAACGGA TAAGCCGGGA CAGCCGCAGC CTGGTCGAAA AAGACCGCTT TGAGCAGGTG
AACATGAACA GTTCCAGCCT GATCAAGGGC GATGAGCTGC ATACCACCCA GGGTGAGCGC
AACACCCGGA TCGGCGGCAA CGAACTGCTT TCCATCACCG GTGCCGGCAG CATCGCCGTG
GACGGCACCT GGGTCGTGCA GGCCGGATCA CAGGCTCGCG TCACCGCCAC CAATGTGGTG
GTCGATGCCG ACATGAACCT GACACTCAAG GCCGGTGGAC AGCATATCGT CATCAACTCC
GCGGGGATTT TCAGCAGCGT GCCGATCGTG CAGGGCGGAG CCCCCATGGC CGGCATCGCT
CCGCAGCAGG CGCTCCAGGT TCTGGCCGAA GCACCACAGA CCGTCGTCGC CAATTCGCTG
CCTCTCGTGG CTGCCGCCAG GCAACGTGCC GCGGACTTCT GCCCGCTCTG CGAAATCTGT
CGCGATGGAC TGTGCAGTGT TGGAGGTGCC GCATGA
|
|---|
| Protein sequence | MFAPANSAHF ALSIPSVRND FKVLAFDGTE AISTLYSIRI ELLSENPDFD LEGLLGQPAF
LQFGLSGEGI HGHIEDVYVG EAGRRLARYH LTLVPVLHYL QFSFNQRIFQ HLTVPQIIAQ
VLAGHGIQPD VYVFNVHTSP EREYCTQYGE SDFDFIQRLC AEDGIAWHHQ HSADTHLLVF
TEDQAWFPLL GCTPYRQDTG TVADHPVVNR FSQRFSSRTS KVTRRDYDLK RPSLLLESQF
TAEFEPALED YRYPSPITTL ERGQVLARQA LERHRVDYQL AEGQSDQPTL RSGHFFKLTE
HPRKTCNELW LLLSVTHSGR QPQSLEESVP GDSQAEDRFT QGYRNTFTAI PWDVFFRPPL
LTRRPLPGCQ TARVTGPAGE EVFCDEYGRV KVELHWDRRE LGSDKSSCWL RVASSWAGER
FGAVTIPRIG MEVVVSFLEG NPDCPLITGV VPNKTTPVPY ALPANKSRTV LRSRSTPNSG
GYNELSIEDR AGQEKIFLRA QRDIEQLILN DSHTSIGNDR HERISRDSRS LVEKDRFEQV
NMNSSSLIKG DELHTTQGER NTRIGGNELL SITGAGSIAV DGTWVVQAGS QARVTATNVV
VDADMNLTLK AGGQHIVINS AGIFSSVPIV QGGAPMAGIA PQQALQVLAE APQTVVANSL
PLVAAARQRA ADFCPLCEIC RDGLCSVGGA A
|
|---|
| |