| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3250 |
|---|
| Symbol | |
|---|
| ID | 5359533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 3364069 |
|---|
| End bp | 3365727 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640812301 |
|---|
| Product | thiamine pyrophosphate protein |
|---|
| Protein accession | YP_001348610 |
|---|
| Protein GI | 152984333 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0654784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACC CCCTTCCCCG GCGCAATGGC GGGCAGATCC TGGTGGAAGC GCTGCGGCGC
AACGCCGTCG ATACGGTCTA TTGCATCCCC GGTGAAAGCT ACCTGCCGGT GCTCGACGCG
CTGCACGACG CCGCCGGCAT CCGTACCGTC GTCACCCGTC ACGAAGGCGC CGCCTCGAAC
ATGGCCGACG CCTACGGCAA GCTGAGCGGA CGACCGGGCA TCTGCTTCGT CACCCGCGGC
CCCGGCGCCA CCCACGCGGC CAATGGCGTG CACACCGCGA AGCAGGACTC GACGCCGATG
ATCCTGTTCA TCGGCCAGGT GGAAAGCGCC TTCAAGGGCC GCGAGGCGTT CCAGGAAGTC
GACTACGTGC AGATGTTCTC CGGCCTGGCC AAATGGGTCG TGGAAATAGA CCGCATCGAC
CGGATACCGG AACTCGTCGC CCGCGCCTTC GGTGTCGCCA CCTCGGGCCG GCCGGGCCCG
GTGGTGGTCG CGCTGCCCGA GGAGATCCTG TTCGGTTCCG CGCAGGTCGC GGACGCACCG
GCGCCACGCT TGCTGCCTGG CCAGCCTGCG GCCGCGGCGA TGGGCGAACT GCAAGAGCGG
CTGGACCGCG CGCAGCGTCC GCTGCTGGTG CTCGGCGGCA GCGGCTGGGA CGAGACCGCC
CGCAAGCGCC TGGCGGCCTT CGTTCATGCC AACGGCCTGC CGGTGGCCGC CTCGTTCCGC
CGCCAGGACC TGTTCGACAA CCGCGATCCG CACTATGTCG GACAACTGGG CTTCGGCGCC
GCGCCAGGTC TGCTCGAGCG TGTTCGACAG GCCGACCTGC TGCTGGTGCT CGGTTCGCGC
CTGAGCGAAA CGCCGAGCGC CGGCTACAGC CTGGTCGGTT GCCCCGAGCC GGCGCAGGCG
CTGGTCCACG TCCATGCCGA CGGCGCGGAG CTCAACCGCG TCTACCTGGC GCACCTGCCG
ATCCAGGCCA CTCCCGTCGC CTTCGCCGAG GCCCTCGCCG CCCTGCCGCC ACGGCCCTCG
CCGCCCTGGC AGGCCTGGCG CGAAGCCGCC CGCGCCGACT ACCTGGCGTA TTCGACCCCC
GTCGCCAGCG ACCCGGCGTT GCAGGGCGTC GACCTGGCGG CGGTGGTCGC GCATCTGGAT
GAAACCTTGC CGGACGATGC GGTGATCGCC AACGGCGCCG GCAACTACGC GGTCTGGGTG
CACCGCTTCT ACCGCTATCG CCAGGCCCGC ACGCAGTTGG CGCCGACCAA TGGCGCCATG
GGCTACGGCC TGCCCGCGGC GATCGCCGCC AGCCTGCGCG AGCCGCGGCG CGACGTGGTG
TGCTTCGCCG GCGACGGCTG CTTCATGATG TACCCGCAGG AACTGGCGAC CGCCGCGCAG
TTCGGCGCGA CACCGGTGGT GATCGTGGTC AACAACGGCA TGCTCGGGAC CATCCGCATG
CACCAGGAGC GCGCATACCC AGGACGCGTT TCCGCCACCA CCCTGGTCAA TCCCGACTTC
GTCGCCCTGG CGCGGGCGTT CGGCGCCTAC GCCGAGCGGG TGGAACGCAG CGCCGACTTC
CCCGAGGCAT TCCGCCGCGC CCGCGCAAGC GGGCGCCCGG CGCTGCTCGA ACTGCTCACC
GATCCGCGCC AGGTCACGCC ACAGGCACGC CTCGCCTGA
|
|---|
| Protein sequence | MADPLPRRNG GQILVEALRR NAVDTVYCIP GESYLPVLDA LHDAAGIRTV VTRHEGAASN
MADAYGKLSG RPGICFVTRG PGATHAANGV HTAKQDSTPM ILFIGQVESA FKGREAFQEV
DYVQMFSGLA KWVVEIDRID RIPELVARAF GVATSGRPGP VVVALPEEIL FGSAQVADAP
APRLLPGQPA AAAMGELQER LDRAQRPLLV LGGSGWDETA RKRLAAFVHA NGLPVAASFR
RQDLFDNRDP HYVGQLGFGA APGLLERVRQ ADLLLVLGSR LSETPSAGYS LVGCPEPAQA
LVHVHADGAE LNRVYLAHLP IQATPVAFAE ALAALPPRPS PPWQAWREAA RADYLAYSTP
VASDPALQGV DLAAVVAHLD ETLPDDAVIA NGAGNYAVWV HRFYRYRQAR TQLAPTNGAM
GYGLPAAIAA SLREPRRDVV CFAGDGCFMM YPQELATAAQ FGATPVVIVV NNGMLGTIRM
HQERAYPGRV SATTLVNPDF VALARAFGAY AERVERSADF PEAFRRARAS GRPALLELLT
DPRQVTPQAR LA
|
|---|
| |