| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_2869 |
|---|
| Symbol | |
|---|
| ID | 5354949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 2947614 |
|---|
| End bp | 2949038 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640811920 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_001348229 |
|---|
| Protein GI | 152984852 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATGA AGAATCTTTC CCTGCTTTCC GCCTGCCTGC TGCTCGGCGC CTGCGGCAGC
GCGCCGGCGC CCCTCGACAG CGGCCTGGCC GCGCCCGCCC AGTGGCGCTA CCTGGCGGCC
GGGCGCAGCG ATGCCAGCGA TATCCGCCAG TGGTGGAAGG CCTTCGGCGC GCCGGAGCTG
GACAGCCTGC TGCAACGCGC CCTGATGAAC AGCCAGGATC TCGGCGCCGC GGTAGCCCGC
GTGCGCCAGG CCCAGGCCTC GGCGGTGATC GCCGGCGCGC CGTTGCTGCC CGAGCTGAAT
GCGACGCTCG GCGCCAGCCG GCAGAAACTC CTGCGCGGCT CGGGCTACAG CGGTACCGAC
GCGACCTCCG ACAACGACGC CGTCGACTCC TTCTCCGCCG GCCTCAGCGC CAGCTACGAA
GTGGACTTCT GGGGCGGTCG CCGGGCTGCC TATCGCAGCG CCCTGGAAAG CCTCAAGGCC
AGCGAGTACG ACCGCGCCAC GGTAGAACTG ACCCTGCTCT CCGGCGTCGC CAACAGCTAC
CTGCAGCTAT TGGCGCTGCG CGAACAGCAG CGCATCGCCA GGCTCAACCT GGACAACGCC
GAGCACGTCC TGCGCCTGGT GGAGACCCGT CACGCCGCCG GCTCGGCCAC CGCCCTGGAG
GTCGCCCAGC AGAGCAGCCT GGTCGCCAGC CAGCGCAAGC AGCTGCCGCT GCTCGAACAG
CAGACCCATG AGGCGCTGAT TACCCTGGCC ACCCTGATCG GCGAGCCGGT GCAGGACCTG
CGGGTGGCCG AACGGCCTTT CGACAGCCTG CGCTGGCCGG AGACCGGAGC GGGCCTGCCG
AGCGAACTGC TCGGTCGCCG TCCCGACATC GCCAACGCCG AAGCGCAACT GGCCGCGGCC
CAGGCCGACG TCCAGGTGGC GCGCGCGGCG CTGTTCCCCA GGCTGACCCT GAGCGCCTCG
CTGTCGTCCG GCGCCAACCG CGCCGCCGAC ACTTTCCGCA GCCCCTACTA CAACCTCGGC
GCCAACCTGC TCGCACCGAT CTTCAACCAC GGCCGCCTGC GCGCCGACCG CGACCGCAGT
CTGGCGCGCC AGGAAGAACT GCTGGAAACC TACCGCAAGG CGATCCTCAC CGCCTTTGCC
GACACCGAGC GCTCGCTGAA CAGCATCGAC GGCATCGACC GACAACTGCA CTGGCAGCAG
CAGGAACTGG AGCAGGCGCA GCGCGCCTTC GACCTCTCCG ACAGCCGCTA CCAGGCCGGC
GCGGAAACCC TGCTGACGGT CCTCGAAACG CAACGCACGC TGTACGCGGC GCAGGATGCC
GCCGTGCAAC TGCGGCTGGC CCGCCTGCAG GCCTCGGTCG GCCTGTACAA GGCCCTCGGC
GGCGGCTGGC AGAGCGACCG CGAGAATCTC GTGCGGAAAG ACTGA
|
|---|
| Protein sequence | MSMKNLSLLS ACLLLGACGS APAPLDSGLA APAQWRYLAA GRSDASDIRQ WWKAFGAPEL
DSLLQRALMN SQDLGAAVAR VRQAQASAVI AGAPLLPELN ATLGASRQKL LRGSGYSGTD
ATSDNDAVDS FSAGLSASYE VDFWGGRRAA YRSALESLKA SEYDRATVEL TLLSGVANSY
LQLLALREQQ RIARLNLDNA EHVLRLVETR HAAGSATALE VAQQSSLVAS QRKQLPLLEQ
QTHEALITLA TLIGEPVQDL RVAERPFDSL RWPETGAGLP SELLGRRPDI ANAEAQLAAA
QADVQVARAA LFPRLTLSAS LSSGANRAAD TFRSPYYNLG ANLLAPIFNH GRLRADRDRS
LARQEELLET YRKAILTAFA DTERSLNSID GIDRQLHWQQ QELEQAQRAF DLSDSRYQAG
AETLLTVLET QRTLYAAQDA AVQLRLARLQ ASVGLYKALG GGWQSDRENL VRKD
|
|---|
| |