| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_2708 |
|---|
| Symbol | |
|---|
| ID | 5356126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 2724730 |
|---|
| End bp | 2726010 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640811759 |
|---|
| Product | RND efflux membrane fusion protein precursor |
|---|
| Protein accession | YP_001348068 |
|---|
| Protein GI | 152987495 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0286088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCAA CCACCGGTAA ATCCAAGTTC CGTACCCTGC GCCCGTGGCT GATCACCGCC
CTGGCCTTCG CCGCCGTGAT CGGCCTGGTG ATGTGGCTGG CCGCGCCCGC CTCGGCGCCG
TCCTCCGACG GGCGACCCGG TCGCGGCGGC AAGCCGGGCG CCGCGCTGCC CAAGGCCAAC
GCGCTCACCG TCGGCGTGGC CAGGGTAGAG CAGGGCGACC TGGCGCTGCA TTTCAACGCG
CTTGGCACCG TCACCGCCTT CAACACGGTG AACGTCAAGC CGCGGGTCAA CGGCGAGCTG
GTCAAGGTGC TGTTCCAGGA GGGGCAGGAG GTCAAGGCCG GCGACCTGCT GGCGGTGGTC
GACCCGCGCA CCTACAAGGC GGCGCTGGCC CAGGCCGAGG GCACGCTGAT GCAGAACCAG
GCGCAACTGA AGAACGCCGA GATCGACCTG CAGCGCTACA AGGGGCTGTA TGCCGAGGAC
TCGATCGCCA AGCAGACCCT GGATACCCAG GAAGCCCAGG TCCGCCAGTT GCAGGGCACC
ATCCGCACCA ACCAGGGCCA GGTCGACGAC GCCCGTCTCA ACCTGGCCTT CACCGAGGTC
CGCGCGCCGA TTTCCGGGCG CCTCGGCCTG CGCCAGGTGG ACATCGGCAA CCTGGTCACC
AGCGGCGACA CCACGCCGCT GGTGGTGATC ACCCAGGTCA AGCCGATCTC GGTGGTATTC
AGCCTGCCGC AGCAGCAGAT CGGCACCGTC GTCGAGCAGA TGAGCGGTCC TGGCAAGCTG
GCGGTCACCG CGCTGGACCG CAACCAGGAA AAGGTCCTCG CCGAAGGCGT GCTGGCCACC
CTGGATAACC AGATCGACAC CACCACCGGC ACGGTCAAGC TCAAGGCGCG CTTCGAGAAC
ACCGACGGCA AGCTGTTCCC CAACCAGTTC GTCAACGTGC GCCTGCTGGC GCAGACCCTC
AAGGGCGTGC TGACCATTCC GGCCAACGCC GTGCAGCGCG GCACCAACGG CATCTATGTG
TACGTGGTCG GCGCCGACAG CAAGGTCAGC CAGCGCAGCG TCGCCATCGG CACCAGCGAG
AACGAGCGGG TGGTGGTGGA AAGCGGCCTG AAGGCCGGCG AACAGGTGGT GGTGGAAGGC
ACCGACCGCC TGCGCGACGG TATGGAAGTG CGTGTCGCCG AAGCCTCCCC GCAGGTCCTC
GAGGGCGAGC CGCAGAAACC GCAGACCGGC CGTCCCAGCG GCCTCCAGGG CGACTCGGTG
GGCAGCGGGA GCGCTGAATG A
|
|---|
| Protein sequence | MTPTTGKSKF RTLRPWLITA LAFAAVIGLV MWLAAPASAP SSDGRPGRGG KPGAALPKAN
ALTVGVARVE QGDLALHFNA LGTVTAFNTV NVKPRVNGEL VKVLFQEGQE VKAGDLLAVV
DPRTYKAALA QAEGTLMQNQ AQLKNAEIDL QRYKGLYAED SIAKQTLDTQ EAQVRQLQGT
IRTNQGQVDD ARLNLAFTEV RAPISGRLGL RQVDIGNLVT SGDTTPLVVI TQVKPISVVF
SLPQQQIGTV VEQMSGPGKL AVTALDRNQE KVLAEGVLAT LDNQIDTTTG TVKLKARFEN
TDGKLFPNQF VNVRLLAQTL KGVLTIPANA VQRGTNGIYV YVVGADSKVS QRSVAIGTSE
NERVVVESGL KAGEQVVVEG TDRLRDGMEV RVAEASPQVL EGEPQKPQTG RPSGLQGDSV
GSGSAE
|
|---|
| |