| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_2583 |
|---|
| Symbol | |
|---|
| ID | 5359035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 2604767 |
|---|
| End bp | 2606992 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640811634 |
|---|
| Product | NADP-dependent isocitrate dehydrogenase |
|---|
| Protein accession | YP_001347947 |
|---|
| Protein GI | 152989149 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.202906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATCC GCTCGAAGAT CACCTACACC TTCACCGACG AAGCACCCGC GCTCGCCACC
TACTCGCTCC TCCCCATCGT CAAGGCCTTT GCCGCTTCCG CCGGCATCGA CGTCGAGACC
AGCGACATCT CTCTTGCAGG ACGCATCCTG GCCAACTTCG CCGACCGCCT CGAAGCCGAC
CAGCGTATCG AAGACGACCT CGCCCGCCTG GCGGTCCTGG CCACCTCGCC CGACGCCAAC
ATCATCAAGT TGCCCAACAT CAGCGCCTCG GTGCCGCAGC TCAAAGGCGC GATCGCCGAA
CTGCAGGCCC TGGGCTACAA GGTTCCCGAC TTCCCGGAAG ACCCGCAGAC CGACGAAGAG
AAAGAGGTTC GCGCACGCTA CGCGAAGATC CTCGGCAGCG CCGTGAACCC GGTCCTGCGC
GAAGGCAACT CCGACCGCCG TGCCCCGGCC GCGGTGAAGG CCTACGCCCG CAAGCACCCG
CACTCCATGG GCAAGTGGAG CATGGCCTCG CGCTCGCACG CCGACTACAT GCGCGGCGGC
GACTTCTTCT CCAGCGAACA GTCGATCACC ATGGCCAAGG CCGGTGACGT GCGCATCGAA
TTCGTCGGCA AGGACGGCAA GGTCGAGGTC AAGAAGCAAC TGAGCCTGCA GGAAGGCGAA
GTGCTCGACA GCATGTTCAT GAGCTGCGGC AAGCTGCGCG ACTTCTTCGA GAAGACCCTG
CAGGACTGCA AGGAAACCGG CGTCATGTGG TCCCTGCACG TCAAGGCGAC CATGATGAAG
ATTTCCCACC CGATCGTCTT CGGACATGCG GTGAGCGTCT ACTACAAGGA CGTCTTCGAC
AAGTGGGGCC AACTCTTCGA AGAGCTCGGC GTGAACCCGA ACAACGGCAT CTCCAGCGTC
TACGACAAGA TCAAGTCGCT GCCCGCCTCC CAGCAGGAAG AGATCCTCCA CGACATCCAC
GAGGTGTACA GCCACCGCCC GGAAATGGCG ATGGTCGACT CCGTGAAGGG CATCACCAAC
CTGCACATTC CGAGCGACGT CATCGTCGAC GCCTCGATGC CGGCGATGAT CCGCAACTCC
GGCCAGATGT GGGGCAAGGA CGGCAAGCAG AAAGATACCA AGGCGGTAAT GCCGGAAAGC
ACCTACGCCC GCATCTACCA GGAGATGATC AACTTCTGCA AGACCAACGG CGCCTTCGAC
CCGACCACCA TGGGCAGCGT GCCGAACGTC GGCCTGATGG CGCAGAAGGC CGAGGAATAC
GGCTCCCACG ACAAGACCTT CGAAATGACC GCCGACGGCA CCATGCGCGT GGTCCTGGCC
GACGGCACCG TGCTGATGCA GCACGAAGTG GAGACCGGCG ACATCTGGCG CGCCTGCCAG
ACCAAGGACG CGCCGATCCG CGACTGGGTC AAGCTGGCCG TCACCCGCGC CCGCCAGTCC
GACACCCCGG CGATCTTCTG GCTGGACCCG GAGCGCGCCC ACGACCGCGA GCTGCGCAAG
AAGGTCGAGC TTTACCTCAA GGACCACGAC CTGACCGGCC TCGACATCAG CATCATGGGC
TACAACGAGG CGATCCGCGT GAGCATGGAG CGCCTGATCC GCGGCAAGGA CACCATCTCG
GTGACCGGCA ACGTCCTGCG CGACTACCTG ACCGACCTGT TCCCGATCAT GGAACTGGGC
ACCTCGGCCA AGATGCTCTC CATCGTTCCG CTGATGGCGG GCGGCGGCAT GTACGAAACC
GGCGCCGGCG GCTCGGCACC CAAGCACGTC CAGCAACTGG TGGAAGAGAA CTACCTGCGC
TGGGACTCCC TGGGCGAGTT CCTGGCCTTG GCCGTATCCC TGGAGGAAAC CGGGATCAAG
ACCGGCAACG CCAAGGCCAA GCTGCTCGGC AAGGCACTGG ACGAAGCCAC TGGCAAGCTG
CTGGACAACA ACAAGTCGCC GTCGCGCAAG GTCGGTGACA TCGACAACCG CGGCAGCCAC
TTCTACCTGG CGATGTACTG GGCCCAGGCC CTGGCCGCCC AGGACGAAGA CGCCGAACTG
AAAGCGCATT TCGCACCGCT GGCCAAGGCC CTGACCGAGC AGGAAGCGAC CATCGTCGCC
GAACTCAACG CCGTCCAGGG CAAGCCGGCC GAGATCGGCG GCTACTATCG CTCCAATCCG
GAGCTGACCA GCAAGGTAAT GCGCCCCAGC GCCACCTTCA ACGCGGCGAT CGACAGCCTG
GCCTGA
|
|---|
| Protein sequence | MSIRSKITYT FTDEAPALAT YSLLPIVKAF AASAGIDVET SDISLAGRIL ANFADRLEAD
QRIEDDLARL AVLATSPDAN IIKLPNISAS VPQLKGAIAE LQALGYKVPD FPEDPQTDEE
KEVRARYAKI LGSAVNPVLR EGNSDRRAPA AVKAYARKHP HSMGKWSMAS RSHADYMRGG
DFFSSEQSIT MAKAGDVRIE FVGKDGKVEV KKQLSLQEGE VLDSMFMSCG KLRDFFEKTL
QDCKETGVMW SLHVKATMMK ISHPIVFGHA VSVYYKDVFD KWGQLFEELG VNPNNGISSV
YDKIKSLPAS QQEEILHDIH EVYSHRPEMA MVDSVKGITN LHIPSDVIVD ASMPAMIRNS
GQMWGKDGKQ KDTKAVMPES TYARIYQEMI NFCKTNGAFD PTTMGSVPNV GLMAQKAEEY
GSHDKTFEMT ADGTMRVVLA DGTVLMQHEV ETGDIWRACQ TKDAPIRDWV KLAVTRARQS
DTPAIFWLDP ERAHDRELRK KVELYLKDHD LTGLDISIMG YNEAIRVSME RLIRGKDTIS
VTGNVLRDYL TDLFPIMELG TSAKMLSIVP LMAGGGMYET GAGGSAPKHV QQLVEENYLR
WDSLGEFLAL AVSLEETGIK TGNAKAKLLG KALDEATGKL LDNNKSPSRK VGDIDNRGSH
FYLAMYWAQA LAAQDEDAEL KAHFAPLAKA LTEQEATIVA ELNAVQGKPA EIGGYYRSNP
ELTSKVMRPS ATFNAAIDSL A
|
|---|
| |