| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_2148 |
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| Symbol | topA |
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| ID | 5358167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | + |
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| Start bp | 2202565 |
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| End bp | 2205171 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640811201 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001347520 |
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| Protein GI | 152987110 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAT CGCTGGTCAT CGTGGAATCC CCGGCCAAGG CCAAGACCAT CAACAAGTAC
CTGGGCAGCC AGTACGTGGT GAAGTCGAGC ATCGGCCACA TCCGTGACCT GCCCACCAGT
GGTTCGTCGA GTTCCAAGGA GCCGGCGGCC AAGGGCCGCA AGAGCGCTGC CGAGGCACCG
GCGCTGTCAC CGAAGGAAAA GGCCCGGCGC CAACTGGTCT CGCGCATGGG GGTCGACCCC
GAGCATGGCT GGAAGGCCAA GTACGAGATC CTGCCCGGCA AGGAAAAGGT CATCGAGGAA
CTGCGCCGCC TGGCCAAGGA CGCCGACACC GTCTATCTCG CGACCGACTT GGACCGCGAG
GGGGAGGCCA TCGCCTGGCA CCTGCGGGAG GCCATCGGCG GCGACGAAAG CCGCTACAAG
CGCGTGGTAT TCAACGAAAT CACCAAGAAG GCCATCCAGG AAGCCTTCTC CCAGCCCGGC
GAACTCGATA TCAACCGGGT GAACGCCCAG CAGGCGCGGC GTTTCCTCGA TCGCGTGGTC
GGCTACATGG TCTCGCCGCT GCTCTGGCAG AAGATCGCCC GCGGGCTGTC CGCCGGGCGC
GTGCAGTCGG TGGCGGTAAA GCTGGTGGTC GAGCGCGAAC GCGAGATCCG CGCCTTCGTC
CCGGAAGAGT ACTGGGAAGT GCATGCCGAC CTCGGTACCG CCAAGGGCGC CAACGTGCGC
TTCGAAGTCA CCCGCGAGAA GGGCGAGGCC TTCAAGCCGC TCAATGAAGC CCAGGCCATG
GCGGCCCTGG AAAAGCTGAA GGCGTCGGCC TATAGCGTCG CCAAGCGCGA GGACCGGCCG
ACCTCCAGCC GTCCCTCGGC ACCGTTCATC ACATCCACCT TGCAGCAGGC GGCGAGCAAC
CGCCTGGGCT TCGGGGTGAA GAAGACCATG ATGATGGCCC AGCGTCTCTA CGAGGCCGGC
TACATCACCT ACATGCGTAC CGACTCGACC AACCTGTCGG CCGATGCCAT TGGCATGGTC
CGCGGTTTCA TCGAGGACGA GTTCGGCCAG AAGTACCTGC CGGGCAAGGC CAACGTCTAC
TCGAGCAAGG AGGGCGCCCA GGAAGCGCAC GAGGCGATCC GTCCTTCCGA CGTCAACCTC
AAGCCGACCC AGCTGTCCGG CATGGAGCGC GACGCCGAGC GCCTGTACGA CCTGATCTGG
CGCCAGTTCG TGGCGTGCCA GATGACCCCG GCCGAATACC TCTCGACCAG CGTGAGCGTC
ACCGCCGGCG ATTTCGAGTT GCGCGCCAAG GGCCGCATCC TCAAGTTCGA CGGCTACACC
CGGGTACTGC CGCAGCAGAG CAAGCCGGGC GAGGACGACG TCCTGCCGGA AATGAAGGAA
GGCGAGAACC TCAAGCTGAT CAAGCTCGAT CCGAGCCAGC ACTTCACCAA GCCGCCGGCG
CGCTACTCCG AAGCGAGCCT GGTCAAGGAA CTGGAGAAGC GCGGTATCGG CCGCCCCTCG
ACCTACGCGG CGATCATCTC GACCATCCAG GAACGCGGCT ACGTCACCAC CCACAACCGC
CGCTTCTATG CGGAGAAGAT GGGCGACATC GTCACCGATC GGCTCAACGA GAGCTTCGCC
AACCTGATGG ACTACGGCTT CACCGCCGGA ATGGAAGAAC ACCTCGACGA CGTGGCCCAG
GGCGAGCGTG ACTGGAAGCA CCTGCTCGAC GAGTTCTACG GCGATTTCAA GAAGAAGCTC
GAGGTTGCCG AAGTCAGCGA AAAGGGAATG CGCGCCAACC AGCCGACCCT GACCAGCATT
CCCTGCCGCG AGTGCGGCCG GCCGATGATG ATTCGTACCG CCTCCACCGG CGTGTTCCTC
GGCTGCTCGG GCTACAGCCT GCCGCCGAAG GAACGTTGCA AGGCGACCGT CAACCTGATT
CCCGGCGACG AGATCGCCGC GGACGATGAG GGCGAATCGG AGTCGCGTGT GCTGCGCGGC
AAGCACCGCT GCCCGATCTG CAGCACCGCG ATGGATGCCT ACCTGCTGGA TGAGAAGCAC
AAGCTGCATA TCTGTGGCAA CAACCCGGAT TGCCCGGGTT ACGAGATCGA AGAAGGCCAG
TACCGGATCA AGGGCTACGA AGGTCCGAGC CTGGAGTGCG ACAAGTGCGG AAGCGAGATG
CAGTTGAAGA CCGGCCGTTT CGGCAAGTTC TTCGGTTGCA CCAACCCGAC CTGCAAGAAC
ACCCGCAAGC TGTTGAAGAA CGGCGAGGCG GCACCGCCGA AGATGGACGC CATCCGCATG
CCCGAGCTGA AGTGCGAGAA GGTGGATGAC ATCTACGTGC TGCGCGACGG TGCCTCGGGG
ATGTTCCTGG CCGCCAGCCA GTTCCCGAAG AATCGCGAGA CCCGTGCTCC GCTGGTGAGC
GAGATCATTC CGCACAAGGC CGAGCTGGAT CCGAAGTACC ACTACCTTTG CGATGCCCCG
CAGAAAGACC CGGATGGCCG TCCCGCGGTG ATCCGTTTCA GCCGCAAGAC CAAGGAGCAG
TACGTGCAGT CCGAGGTCGA CGGCAAGCCC ACCGGCTGGC GCGCGTTCTA CGACGGCGGC
AAGTGGAAGG TCGAAGACAA GCGCTGA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGSQYVVKSS IGHIRDLPTS GSSSSKEPAA KGRKSAAEAP
ALSPKEKARR QLVSRMGVDP EHGWKAKYEI LPGKEKVIEE LRRLAKDADT VYLATDLDRE
GEAIAWHLRE AIGGDESRYK RVVFNEITKK AIQEAFSQPG ELDINRVNAQ QARRFLDRVV
GYMVSPLLWQ KIARGLSAGR VQSVAVKLVV EREREIRAFV PEEYWEVHAD LGTAKGANVR
FEVTREKGEA FKPLNEAQAM AALEKLKASA YSVAKREDRP TSSRPSAPFI TSTLQQAASN
RLGFGVKKTM MMAQRLYEAG YITYMRTDST NLSADAIGMV RGFIEDEFGQ KYLPGKANVY
SSKEGAQEAH EAIRPSDVNL KPTQLSGMER DAERLYDLIW RQFVACQMTP AEYLSTSVSV
TAGDFELRAK GRILKFDGYT RVLPQQSKPG EDDVLPEMKE GENLKLIKLD PSQHFTKPPA
RYSEASLVKE LEKRGIGRPS TYAAIISTIQ ERGYVTTHNR RFYAEKMGDI VTDRLNESFA
NLMDYGFTAG MEEHLDDVAQ GERDWKHLLD EFYGDFKKKL EVAEVSEKGM RANQPTLTSI
PCRECGRPMM IRTASTGVFL GCSGYSLPPK ERCKATVNLI PGDEIAADDE GESESRVLRG
KHRCPICSTA MDAYLLDEKH KLHICGNNPD CPGYEIEEGQ YRIKGYEGPS LECDKCGSEM
QLKTGRFGKF FGCTNPTCKN TRKLLKNGEA APPKMDAIRM PELKCEKVDD IYVLRDGASG
MFLAASQFPK NRETRAPLVS EIIPHKAELD PKYHYLCDAP QKDPDGRPAV IRFSRKTKEQ
YVQSEVDGKP TGWRAFYDGG KWKVEDKR
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