| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_2138 |
|---|
| Symbol | |
|---|
| ID | 5356000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 2191384 |
|---|
| End bp | 2193312 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640811191 |
|---|
| Product | putative soluble lytic transglycosylase |
|---|
| Protein accession | YP_001347510 |
|---|
| Protein GI | 152986349 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGTC GCCTGTTCAC TCTCGTTTCC TGCCTGTTGC TCAGTATTTC CTCCGTCGAC
GCGGTCCACG CCGCTTCCCT GACCGAACAA CGCCGTCTCT ACGACCAGGC CAAGGCCGCC
CTGGCCAAGG GCAACAGCGC ACCCTACATG GCCTCGCGCA GCGCCCTGCG CGATTACCCG
CTGGAACCCT ACCTGGCCTA CGACGAACTG ACCCATCGGC TGAAGACCGC CAGCAACGAG
GAAGTCGAGC GCTTCCTCAC CGAGCACGGC GACCTGCCGC AGATCGGCTG GCTGAAACTG
CGCTGGCTGC GCCTGCTGGC CGATCGCGGC GACTGGAAGA CCTTCGTCAA CCACTACGAC
CCGAAACTGA ACTTCACCGA ACTCGACTGC CTCTACGGCC AGTACCAGCT GGGCCACGGG
CAGAAGGCCG AGGGCTACGC CACCAGCGAG CGCCTGTGGC TGGTCGGCAA GTCGCAGCCG
GCCGCCTGCG ATACCCTGTT CAGCCTCTGG CAGGGCGAAG GCCAGCTCAC CGAGGAGAAG
GTCTGGAAGC GTCTCAAGCT GGCCGCCGAG GCGCGCAACT ACAGCCTTGC CTCGCACCTC
GCGCAGCGCC TGCCGACCCT CGGCAACCAG GGCACGCTGA TGGTCAGCGT GGCGCAGAAC
CCCGCCCAGT TGAGCCAGAC CGGCCGCTTC AGCCAGCGCG ACCACGCCAC CGCCGACGTG
GTCGGCCTCG GCCTGCGCCG CCTGGCGCGG CAGGACCCGG AAAAGGCCCT GAGCCTGCTC
GACTACTACA GCTCGGCGCT ACCCTTCTCC AGCGACGAGA AGGTCGCCAT CGCCCGCGAG
ATCGGTCTCA GCCTGGCCAA GCGCTTCGAT CCGCGCGCGC TGCCGCTGAT GACCCGGTAC
GACCCCGGCC TGCGCGACAA CACCGTCACC GAATGGCGCA CCCGCCTGCT GCTGCGCCTG
GGCCGCTGGG ACGAAGCCTA CGCGCTGACC CGCAAGCTGC CCCAGGACCT CGCCGCCACC
AGCCGCTGGC GCTACTGGCA GGCGCGCAGC CTGCAGCTGG CGCAGCCGAA CAGCAAGGAG
CCGATCGCGC TGTACCAGAA GCTCGCCGGC GAGCGCGATT TCTACGGCTT CCTCGCCGCC
GACCGCCTGA GCGTGCCGTA CAAGCTCGGC AACCGCCCTG CGCACATCGA CCCGCGCGTC
CTGCAACGCG TTCGCAACGC CGCCAGCACG CGCCGGGCCA TGGAGTTCTT CAACCGTGGC
GAAGTGATCA ACGCCCGCCG CGAGTGGTAC CACGCCGCGC GCCTGTTCGA TCGCGACGAG
CTGATCGCCC AGGCCAGGCT GGCCTACGAC ATGCAGTGGT ATTTCCCGGC GATCCGCTCG
ATCAGCCAGG CGCAGTACTG GGACGACCTC GACATCCGCT TCCCGATGGC GCACCGCGCC
ACCCTGGTGC GCGAAGCGAA GAACCGCGGC CTGCACTCCA GTTGGATCTT CGCCATCACC
CGCCAGGAAA GCGCGTTCAT GTCCGATGCC CGCTCGGGGG TCGGCGCCAC CGGCCTGATG
CAGCTGATGC CCGGCACCGC CAAGGAGACC TCGCGCAAGT TCGGCATCCC GCTGGCCTCG
ACCCAGCAAC TGATCGTGCC CGACGTCAAC ATCCGCCTCG GCGCCGCCTA CCTGAGCCAG
GTGCATGGCC AGTTCAACGG CAACCGGGTA CTCGCCTCGG CCGCCTACAA CGCCGGTCCG
GGCCGCGTCC GCCAGTGGCT GAAGGACACC CGCCACCTGG CCTTCGACGT ATGGATCGAG
ACCATCCCGT TCGACGAGAC TCGCCAGTAC GTGCAGAACG TGCTGTCCTA TGCGGTGATC
TACGGACAGA AGCTCAATGC GCCGCAGCCC ATCGTCGACT GGCACGAGCG CTACTTCGAC
GATTTCTGA
|
|---|
| Protein sequence | MRGRLFTLVS CLLLSISSVD AVHAASLTEQ RRLYDQAKAA LAKGNSAPYM ASRSALRDYP
LEPYLAYDEL THRLKTASNE EVERFLTEHG DLPQIGWLKL RWLRLLADRG DWKTFVNHYD
PKLNFTELDC LYGQYQLGHG QKAEGYATSE RLWLVGKSQP AACDTLFSLW QGEGQLTEEK
VWKRLKLAAE ARNYSLASHL AQRLPTLGNQ GTLMVSVAQN PAQLSQTGRF SQRDHATADV
VGLGLRRLAR QDPEKALSLL DYYSSALPFS SDEKVAIARE IGLSLAKRFD PRALPLMTRY
DPGLRDNTVT EWRTRLLLRL GRWDEAYALT RKLPQDLAAT SRWRYWQARS LQLAQPNSKE
PIALYQKLAG ERDFYGFLAA DRLSVPYKLG NRPAHIDPRV LQRVRNAAST RRAMEFFNRG
EVINARREWY HAARLFDRDE LIAQARLAYD MQWYFPAIRS ISQAQYWDDL DIRFPMAHRA
TLVREAKNRG LHSSWIFAIT RQESAFMSDA RSGVGATGLM QLMPGTAKET SRKFGIPLAS
TQQLIVPDVN IRLGAAYLSQ VHGQFNGNRV LASAAYNAGP GRVRQWLKDT RHLAFDVWIE
TIPFDETRQY VQNVLSYAVI YGQKLNAPQP IVDWHERYFD DF
|
|---|
| |