| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_2031 |
|---|
| Symbol | gspF2 |
|---|
| ID | 5354674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 2071901 |
|---|
| End bp | 2073118 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640811084 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_001347407 |
|---|
| Protein GI | 152986066 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCTT TCGAATACCT CGCCCTCGAC CCCGGCGGTC GCCAGCAGAA GGGCGTGCTG
GAGGCGGACA GCGCGCGCCA GGTCCGCCAG CTGCTGCGCG AACGCCAACT GGCGCCGCTC
GAGGTGAAAC CCACGCGTAC CCGCGAGCAG GGCGGGCAGG GCGGACGCCT GAGCTTCGCC
CGCGGGCTGT CGGCGCGCGA CCTGGCGCTG GTGACCCGGC AACTGGCGAC CCTGGTCCAG
GCCGCGCTGC CGATCGAGGA AGCGTTGCGC GCCGCCGCCG CGCAATCCAC CTCGCAGCGC
ATCCAGTCGA TGCTCCTCGC GGTGCGCGCC AAGGTCCTCG AGGGGCATAG CCTGGCCGGC
AGCCTGCGCG AGTTCCCCTC GGCCTTCCCC GAACTGTATC GCGCCACGGT GGCTGCCGGC
GAGCACGCCG GGCACCTCGG CCCGGTGCTG GAGCAGCTCG CCGACTACAC CGAGCAACGC
CAGCAGTCGC GGCAGAAGAT CCAGCTGGCG CTGCTCTATC CGGTGATCCT GATGGTCGCC
TCACTGGCCA TCGTCGGTTT CCTGCTGGGC TACGTGGTGC CCGACGTGGT CCGCGTGTTC
ATCGATAGCG GGCAGACCCT GCCGCTGCTG ACCCGCGTGC TGATCGGCGT CAGCGACTGG
GTCAAGGCCT GGGGCGCGCT GGCCTTCGTC GCGGCGATCG GCGGGGTGAT CGGCTTCCGC
TATGCGCTGC GCAAGGACGC CTTTCGCGAG CGCTGGCATG GCTTCCTGTT GCGCGTGCCG
CTGGTCGGAC GGCTGGTGCG CTCCACCGAC ACCGCGCGCT TCGCCTCGAC CCTGGCGATC
CTCACCCGCA GCGGCGTGCC GCTGGTGGAG GCGCTGGCGA TCGCCGCCGA GGTGATCGCC
AACCGGATCA TCCGCAACGA GGTGGTCAAG GCGGCGCAGA AAGTCCGCGA GGGCGCCAGC
CTGACCCGCT CGCTGGAGGC CACCGGGCAG TTCCCGCCGA TGATGCTGCA CATGATCGCC
AGCGGCGAGC GTTCCGGCGA GCTGGACCAG ATGCTGGCGC GCACCGCGCG CAACCAGGAG
AACGACCTGG CCGCGCAGAT CGGCCTGATG GTCGGCCTGT TCGAGCCGTT CATGCTGATA
TTCATGGGCG CGGTGGTGCT GGTCATCGTC CTTGCCATTC TTCTTCCGAT CCTTTCTCTC
AACCAACTCG TGGGGTAA
|
|---|
| Protein sequence | MAAFEYLALD PGGRQQKGVL EADSARQVRQ LLRERQLAPL EVKPTRTREQ GGQGGRLSFA
RGLSARDLAL VTRQLATLVQ AALPIEEALR AAAAQSTSQR IQSMLLAVRA KVLEGHSLAG
SLREFPSAFP ELYRATVAAG EHAGHLGPVL EQLADYTEQR QQSRQKIQLA LLYPVILMVA
SLAIVGFLLG YVVPDVVRVF IDSGQTLPLL TRVLIGVSDW VKAWGALAFV AAIGGVIGFR
YALRKDAFRE RWHGFLLRVP LVGRLVRSTD TARFASTLAI LTRSGVPLVE ALAIAAEVIA
NRIIRNEVVK AAQKVREGAS LTRSLEATGQ FPPMMLHMIA SGERSGELDQ MLARTARNQE
NDLAAQIGLM VGLFEPFMLI FMGAVVLVIV LAILLPILSL NQLVG
|
|---|
| |