| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_1965 |
|---|
| Symbol | |
|---|
| ID | 5355692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 1997742 |
|---|
| End bp | 1999982 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640811018 |
|---|
| Product | bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_001347346 |
|---|
| Protein GI | 152984021 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase
[COG0287] Prephenate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGG TCACGCCGCT GCAACAGTCG AGCCCTAAGC TGGGCCGCCT GGTGGTGGTG
GGGCTGGGCC TGATCGGCGG CTCCTTCGCC AAGGGGTTGC GGGCCAAGGG GCTGTTCCAT
GAAGTGGTCG GTGTCGACCG CGATGCCGAG TCCTGCCGCC TGGCGGTGGA ACTCGGTGTG
GTCGATCGCT GCGAGGAGGA TCTCGCCAGG GCCTGTGTCG GTGCCGATGT GATCCAGTTG
GCGGTGCCGA TCCTTGCGAT GGAACGACTG CTGGGCGAGC TGGCCGGGCT CGACCTGGGC
AAGGCGATAC TGACCGATGT CGGCAGCGCC AAGGGCAATA TCGTGCGCGC CGCGCGTGCC
GCCTTCGGCG GGATGCCGCC GTACCTGGTA CCGGGGCATC CGATCGCCGG TTCCGAGCAG
AGCGGAGTGA CCGCGGCGAA GGCGACGCTG TTCCGCCGGC ACAAGGTGAT CCTCACGCCC
ACCGCGGAAA CCGACCCGGC CGCGCTGGTC CTGGTCGACA GCCTGTGGCG CGCGCTGGGC
GCGGACGTCG AGCACATGGA GGTCGAGCAT CACGACGAGG TGCTGGCAGC CACCAGCCAC
CTGCCTCACC TGCTGGCCTT CACGCTGGTC GATTCGCTGG CCAAGCGCAG CGAGAATCTG
GAGATATTCC GCTATGCCGC CGGCGGTTTC CGCGATTTCA CGAGGATCGC CGGCAGCGAC
CCGGTGATGT GGCACGACAT CTTTCTCGCC AATCGCGAGG CCGTGCTGCG TACACTGGAT
GTTTTTCGTG ACGACCTCGA CGCGTTGCGC GAGGCCGTCG ACACTGGGGA CGGGCACCAG
TTGTTGGGCG TTTTCACGCG CGCCCGGGTA GCCCGTGAGC ATTTCAGCAA AATCCTGGCC
CGTCGGGCCT ATGTGGACGC CATGCACAAC AACGACCTGA TTTATCTGGC CCAGCCGGGC
GGCAGCCTGT CCGGAACCAT CCGGGTACCG GGCGACAAGT CGATTTCCCA TCGCTCGATC
ATGCTCGGCT CCCTGGCCGA AGGCACCACC GAAGTGGAGG GCTTCCTCGA GGGCGAGGAC
GCACTGGCAA CCATCCAGGC GTTCCGCGAC ATGGGAGTGG TGATCGAGGG GCCGCAGAAC
GGCCGCGTCA CCGTCCATGG CGTTGGCCTG CACGGCCTCA AGGCGCCGCC AGGGCCGATC
TACCTGGGTA ACTCCGGTAC TTCCATGCGT CTACTCAGCG GTCTGCTGGC GGCCCAGCCA
TTCGACAGCA CCCTGACCGG CGACGCTTCC CTTTCCAAGC GGCCGATGAA TCGCGTAGCC
AAGCCGCTGC GCGAGATGGG CGCGGTAATC GAGACGGGGC CGGAAGGCCG TCCGCCGATG
ACCATTCGCG GCGGCCAGCG CCTGACCGGC ATGCACTACG ACATGCCGAT GGCCAGCGCC
CAGGTGAAGT CCTGCCTGTT GCTCGCCGGG CTCTACGCCG CGGGTGAGAC CTCGGTCACC
GAGCCGGCGC CGACCCGCGA CCACACCGAG CGCATGCTGC GTGGCTTCGG CTATCCGGTG
GAGGTCGAGG GCAGCACCGC CAGAGTCGAG TCCGGGCACA AGCTGAGCGC CACCCATATC
GAAGTGCCGG CCGACATCTC CTCGGCAGCC TTCTTCCTGG TCGCCGCCAG CATCGCCGAG
GGTTCGGAAC TGGTGCTGCA GCACGTTGGC ATCAACCCGA CCCGCGTCGG CGTGATCGAG
ATCCTGCGCC TGATGGGCGG CGACCTGAGC CTGGAAAACC AGCGCGAGGT GGGTGGCGAA
CCGGTCGCCG ACATCCGTGT ACGCTCCGCG CGGCTGAAGG GTATCGATAT TCCCGAGGAC
CTGGTGCCGC TGGCCATCGA TGAGTTCCCG GTGCTGTTCG TTGCCGCCGC CTGCGCCGAA
GGGCGTACCG TGCTGCGTGG CGCGGAGGAG CTGCGGGTCA AGGAGTCTGA TCGCATCCAG
GTGATGGCCG ACGGTCTGAA GACCCTGGGC GTGAAGGCCG AACCGACCCC GGATGGTATC
GTCATCGAGG GCGGCCCGAT CGGTGGCGGC GAAGTCTGGG CGCACGGCGA CCATCGTATC
GCCATGTCCT TCAGCGTCGC CTCGCTGCGT GCGAGCGCGC CGATCCGCAT CCACGATTGC
GCCAACGTCG CCACCTCGTT CCCCAACTTC CTTGCCCTGT GTGCCCAGAC CGGTATCCAG
GTGGCCGTGG AGAACAACTG A
|
|---|
| Protein sequence | MTEVTPLQQS SPKLGRLVVV GLGLIGGSFA KGLRAKGLFH EVVGVDRDAE SCRLAVELGV
VDRCEEDLAR ACVGADVIQL AVPILAMERL LGELAGLDLG KAILTDVGSA KGNIVRAARA
AFGGMPPYLV PGHPIAGSEQ SGVTAAKATL FRRHKVILTP TAETDPAALV LVDSLWRALG
ADVEHMEVEH HDEVLAATSH LPHLLAFTLV DSLAKRSENL EIFRYAAGGF RDFTRIAGSD
PVMWHDIFLA NREAVLRTLD VFRDDLDALR EAVDTGDGHQ LLGVFTRARV AREHFSKILA
RRAYVDAMHN NDLIYLAQPG GSLSGTIRVP GDKSISHRSI MLGSLAEGTT EVEGFLEGED
ALATIQAFRD MGVVIEGPQN GRVTVHGVGL HGLKAPPGPI YLGNSGTSMR LLSGLLAAQP
FDSTLTGDAS LSKRPMNRVA KPLREMGAVI ETGPEGRPPM TIRGGQRLTG MHYDMPMASA
QVKSCLLLAG LYAAGETSVT EPAPTRDHTE RMLRGFGYPV EVEGSTARVE SGHKLSATHI
EVPADISSAA FFLVAASIAE GSELVLQHVG INPTRVGVIE ILRLMGGDLS LENQREVGGE
PVADIRVRSA RLKGIDIPED LVPLAIDEFP VLFVAAACAE GRTVLRGAEE LRVKESDRIQ
VMADGLKTLG VKAEPTPDGI VIEGGPIGGG EVWAHGDHRI AMSFSVASLR ASAPIRIHDC
ANVATSFPNF LALCAQTGIQ VAVENN
|
|---|
| |