Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_1409 |
Symbol | gspK |
ID | 5355326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 1426136 |
End bp | 1427014 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640810462 |
Product | general secretion pathway protein K |
Protein accession | YP_001346793 |
Protein GI | 152985300 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3156] Type II secretory pathway, component PulK |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0046886 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTGACA CGCACGGGCA GCGCGGCGTG GCCCTGATCA GCGTGCTGCT GATCACCGCC CTGGTCACCC TGGTCATCAG CGACATGCTC GCCCGCCAGC GCCTGAACCT GGCCAGCGGC GCCAACCAGT CCGCCCAGCT ACAGCTCTGG CAACTGGCGC TGAGCGGCGA GGCCTGGGCG CGCCAGCAAT TGCTCGCCGA CCTCGGCGAT GCCGACGGCC TCGCTCGCGT CCACCTGGGA CAGCGCTGGG CCAGCGGCGC GCAGGAGTTC GAGATCGAGG GCGGCCATAT CCGCATCCAG CTGCAAGACC TCGGCGCACG CTTCAACCTC GACCGCCTGC GCGATGGCCG CGACCACATC AGCCGCGCCC GCTACCAGCG CCTGGTGGCC CTGCTCGGCC TGGCCCCGCA CGACCCGGCC CGGCTCCCGG CACCGCTCGG TCACGACGGC AAGCCGTTGC CATTCGCCGA CGCCAGCGAA CTCTGGCGCC TCGAAGCGCT GGACGCCGCC GGCATGCGTC GCCTGCGTCC CTGGGTAGCG GCGACGCGCG ATGCCGGCCT GAACCTGAAC ACCGCGCCGG CCGAGCAGCT GGCCTGCCTC GAAGGACTCG ACCCGGGCAT CGCCCAGGCC CTGGTACAGG CCCGTCCGGC CGACGGCTAT CCCAGTGTGC AGGCCTTCAT CGAGCAGCCG CTGCTTTCCG GGCGCAAGGT CGAGCAGTAC GGCCTCGCCG TGGCCAGCGA GCGCTTCCGC GCCGTGCTCG ACGTCCAGCT CGGCGAACAC CGGTTACGCC TGCTCAGCGA CCTGCGCACC CGCAGCGACG GCCAGGTGCA GGTCCTGCGC CGACGGCTCG CGGCGCCCGA CCTTCCCTTC CCGGAGTAA
|
Protein sequence | MSDTHGQRGV ALISVLLITA LVTLVISDML ARQRLNLASG ANQSAQLQLW QLALSGEAWA RQQLLADLGD ADGLARVHLG QRWASGAQEF EIEGGHIRIQ LQDLGARFNL DRLRDGRDHI SRARYQRLVA LLGLAPHDPA RLPAPLGHDG KPLPFADASE LWRLEALDAA GMRRLRPWVA ATRDAGLNLN TAPAEQLACL EGLDPGIAQA LVQARPADGY PSVQAFIEQP LLSGRKVEQY GLAVASERFR AVLDVQLGEH RLRLLSDLRT RSDGQVQVLR RRLAAPDLPF PE
|
| |