| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_1293 |
|---|
| Symbol | secF |
|---|
| ID | 5359415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 1309651 |
|---|
| End bp | 1310571 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640810346 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001346677 |
|---|
| Protein GI | 152987463 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCA AGATCGGTAC CATCAACTTC ATGGGCATTC GCAACGTTGC GTTTGCCGTC
ACCCTGATCC TCACCGTCAT CGCCCTGGGC AGCTGGTTCA CCAAGGGCAT CAACTTCGGC
CTCGACTTCA CCGGCGGTAC GCTGATCGAG CTGACCTACG AGCAACCGGC CGATCTCGGC
AAGGTGCGTG GGCAACTGGT CGGCGCCGGC TACGAGGACG CCGTGGTGCA GAGCTTCGGC
GATGCCCGCG ACGTGCTGGT GCGCATGCCC AGCGAGGATC CCGAGCTGGG CAAGAAGGTC
GCCGCTGCGC TGCAACAGGC CGATACCGGC AACCCGGCGA GCCTGAAGCG GGTCGAGTAC
GTCGGCCCGC AGGTGGGTGA GGAACTGCGC GACCAGGGCG GCCTCGGCAT GCTCCTGGCG
CTGGGCGGGA TCCTGCTGTA CGTCGGCTTC CGCTTCCAGT GGAAGTTCGC CCTCGGCGCG
ATCCTCTCGC TGGTGCATGA CGCCATCATC GTGATGGGCG TGCTGTCGTT CTTCCAGGTG
ACCTTCGACC TGACCGTGCT CGCCGCGGTG CTGGCGGTGG TCGGCTATTC GCTGAACGAC
ACCATCGTGA TCTTCGACCG GGTGCGGGAA AACTTCCGCG TGCTGCGCAA GGCCAGCCTG
ATCGAGAACC TGAACATCTC CACCAGCCAG ACCCTGTTGC GCACCATCGC CACCTCGGTG
TCCACGCTGC TGGCGATCGC CGCGCTGCTG TTCTTCGGCG GCGACAACCT GTTCGGTTTC
TCCATCGCCC TGTTCGTCGG GGTTCTGGCG GGAACCTACT CGTCGATCTA CATCGCCAAC
GTGGTGCTGA TCTGGCTGAA CCTGACCAGC GAGGACCTGA TCCCGCCGCA GGCCAAGGAC
ACCGTCGACG ATCGCCCCTG A
|
|---|
| Protein sequence | MNIKIGTINF MGIRNVAFAV TLILTVIALG SWFTKGINFG LDFTGGTLIE LTYEQPADLG
KVRGQLVGAG YEDAVVQSFG DARDVLVRMP SEDPELGKKV AAALQQADTG NPASLKRVEY
VGPQVGEELR DQGGLGMLLA LGGILLYVGF RFQWKFALGA ILSLVHDAII VMGVLSFFQV
TFDLTVLAAV LAVVGYSLND TIVIFDRVRE NFRVLRKASL IENLNISTSQ TLLRTIATSV
STLLAIAALL FFGGDNLFGF SIALFVGVLA GTYSSIYIAN VVLIWLNLTS EDLIPPQAKD
TVDDRP
|
|---|
| |