Gene PSPA7_1292 details

Gene Information

• Locus tag: PSPA7_1292
• Symbol: secD
• ID: 5357243
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: +
• Start bp: 1307778
• End bp: 1309640
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640810345
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001346676
• Protein GI: 152987443
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCAACA AGTATCCTCT GTGGAAATAT CTGCTGATCC TGGCGGTCCT CGCCGTCGGG 
TTCATCTATT CCGCACCCAA CCTCTACCCG GACGACCCGG CGGTGCAGAT CAGCGGTGCC 
AGCACGGCGC TGCAGGTCAC CCAGGCCGAT GTCGACCGCG CCGCCAAGGC GCTGAGCGAC 
GCCGGTATCG CGGTGAAGGC CGACAGCCTG TCGAAGAAGG GCGGCCTGAT CCGCCTGGTC 
AAGCAGGACG ACCAGCTCCC CGCCAAGGAA GTGGTGCGCC GGACCCTGGG CGACGACTAC 
GTGGTCGCGC TGAACCTGGC CCAGACCACT CCCGAGTGGC TGCGCAAGCT GGGCGGCAGC 
CCGATGAAGC TCGGCCTGGA CCTGTCCGGC GGCGTGCACT TCCTGTTGGA AGTGGACATG 
GACAAGGCGG TCGATGCGCG CCTGAAGGTC TACGAGAGCG AAGTGAAGAG CCTGCTGCGC 
AAGGAGCGCG TGCGCTACCG CAGCCTGCCG ATCCAGGATC GCGCGATCCA GCTCGGCTTC 
ACCGACAGCG AGTCCCTGGA CAAGGCGCGC AGCCTGATCG CCAAGGACTT CCGCGATTTC 
GAGGTCGTGC CCGAAGAGCG CAACGGCCTG CAGGTCCTGC GTGTCGCCCT GACCCAGGCC 
AAGCTGGCGG AAATCCGTGA ATACTCCATC AAGCAGAACC TCACCACCGT CCGCAACCGG 
GTCAACGAGC TGGGCGTGTC CGAGCCGCTG GTGCAGCGCC AGGGCGCCAA CCGCATCGTG 
GTCGAGCTGC CGGGCGTGCA GGACACCGCC GAAGCCAAGC GGATCCTCGG CAAGACCGCC 
AACCTCGAAT TCCGCCTGGC CGCCGAGCCG GATGCGCTGA AGTCCGCCAC CGAGACCTTC 
GAGTTCCGCG AGCCGCGCCG TCCGCCGGTG CCGCTGGAGC GCGGGGTGAT CATCACCGGT 
GACCAGGTCA CCGACGCCAG CGCCAGCTTC GACGAGAACG GCCGTCCGCA GGTGAACATC 
CGTCTGGATG GCCATGGCGG CGAGCTGATG AACCGGGCGA CCCGCAACAA CGTCGGCCGC 
AGCATGGCGG TGGTATTCAT CGAGCAGAAG CCGGTGACCC GCTATACCAA GCAGATGGTC 
GATGGCGTCG AGAAGGAAGT GGCGGTCCCG GCGTTCAAGG AAGAGAAGCA GATCATCAGC 
CTGGCGACCA TCCAGTCGCC GCTGGGCAAC CAGTTCCGCA TCACCGGCCT CGACGGTCCG 
GGCGAGTCCT CCGAACTGGC CCTGCTGCTG CGCGCCGGCG GCCTTGCCGC GCCGATGTAC 
TTCGCCGAGG AGCGTACCAT CGGCCCGAGC CTGGGCGCGG ACAACATCGC CAAGGGTATC 
GACGCGTCGC TGTGGGGCAT GGTCTTCGTG TCGCTGTTCA TCATCGTCAT CTACCGCTTC 
TTCGGCGTGA TCGCCACCGT TGCGCTGGCT TTCAACATGG TCATGCTGGT GGCGCTCATG 
TCGATCCTCG GCGCGACCCT GACCCTGCCT GGCATCGCCG GTATCGTGCT GACCATGGGC 
ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGGATAC GCGAGGAGCT GGCCAATGGC 
ATGTCGGTCC AGCGGGCGAT CCACGAAGGC TTCAACCGCG CCTTCACCGC GATCCTCGAC 
GCCAACCTGA CCTCGCTGCT GGTCGGCGGC ATCCTCTACG CCATGGGCAC CGGCCCGGTG 
AAAGGTTTCG CCGTGACCAT GTCGCTCGGC ATCATCACCT CGATGTTCAC GGCCATCCTG 
GTCACCCGCG CAATGGTCAA CCTGATCTTC GGCGGGCGTG ACTTCAAGAA GCTGTGGATC 
TAA 

 

Protein sequence

MLNKYPLWKY LLILAVLAVG FIYSAPNLYP DDPAVQISGA STALQVTQAD VDRAAKALSD 
AGIAVKADSL SKKGGLIRLV KQDDQLPAKE VVRRTLGDDY VVALNLAQTT PEWLRKLGGS 
PMKLGLDLSG GVHFLLEVDM DKAVDARLKV YESEVKSLLR KERVRYRSLP IQDRAIQLGF 
TDSESLDKAR SLIAKDFRDF EVVPEERNGL QVLRVALTQA KLAEIREYSI KQNLTTVRNR 
VNELGVSEPL VQRQGANRIV VELPGVQDTA EAKRILGKTA NLEFRLAAEP DALKSATETF 
EFREPRRPPV PLERGVIITG DQVTDASASF DENGRPQVNI RLDGHGGELM NRATRNNVGR 
SMAVVFIEQK PVTRYTKQMV DGVEKEVAVP AFKEEKQIIS LATIQSPLGN QFRITGLDGP 
GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNIAKGI DASLWGMVFV SLFIIVIYRF 
FGVIATVALA FNMVMLVALM SILGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELANG 
MSVQRAIHEG FNRAFTAILD ANLTSLLVGG ILYAMGTGPV KGFAVTMSLG IITSMFTAIL 
VTRAMVNLIF GGRDFKKLWI