Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_1292 |
Symbol | secD |
ID | 5357243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | + |
Start bp | 1307778 |
End bp | 1309640 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640810345 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001346676 |
Protein GI | 152987443 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCAACA AGTATCCTCT GTGGAAATAT CTGCTGATCC TGGCGGTCCT CGCCGTCGGG TTCATCTATT CCGCACCCAA CCTCTACCCG GACGACCCGG CGGTGCAGAT CAGCGGTGCC AGCACGGCGC TGCAGGTCAC CCAGGCCGAT GTCGACCGCG CCGCCAAGGC GCTGAGCGAC GCCGGTATCG CGGTGAAGGC CGACAGCCTG TCGAAGAAGG GCGGCCTGAT CCGCCTGGTC AAGCAGGACG ACCAGCTCCC CGCCAAGGAA GTGGTGCGCC GGACCCTGGG CGACGACTAC GTGGTCGCGC TGAACCTGGC CCAGACCACT CCCGAGTGGC TGCGCAAGCT GGGCGGCAGC CCGATGAAGC TCGGCCTGGA CCTGTCCGGC GGCGTGCACT TCCTGTTGGA AGTGGACATG GACAAGGCGG TCGATGCGCG CCTGAAGGTC TACGAGAGCG AAGTGAAGAG CCTGCTGCGC AAGGAGCGCG TGCGCTACCG CAGCCTGCCG ATCCAGGATC GCGCGATCCA GCTCGGCTTC ACCGACAGCG AGTCCCTGGA CAAGGCGCGC AGCCTGATCG CCAAGGACTT CCGCGATTTC GAGGTCGTGC CCGAAGAGCG CAACGGCCTG CAGGTCCTGC GTGTCGCCCT GACCCAGGCC AAGCTGGCGG AAATCCGTGA ATACTCCATC AAGCAGAACC TCACCACCGT CCGCAACCGG GTCAACGAGC TGGGCGTGTC CGAGCCGCTG GTGCAGCGCC AGGGCGCCAA CCGCATCGTG GTCGAGCTGC CGGGCGTGCA GGACACCGCC GAAGCCAAGC GGATCCTCGG CAAGACCGCC AACCTCGAAT TCCGCCTGGC CGCCGAGCCG GATGCGCTGA AGTCCGCCAC CGAGACCTTC GAGTTCCGCG AGCCGCGCCG TCCGCCGGTG CCGCTGGAGC GCGGGGTGAT CATCACCGGT GACCAGGTCA CCGACGCCAG CGCCAGCTTC GACGAGAACG GCCGTCCGCA GGTGAACATC CGTCTGGATG GCCATGGCGG CGAGCTGATG AACCGGGCGA CCCGCAACAA CGTCGGCCGC AGCATGGCGG TGGTATTCAT CGAGCAGAAG CCGGTGACCC GCTATACCAA GCAGATGGTC GATGGCGTCG AGAAGGAAGT GGCGGTCCCG GCGTTCAAGG AAGAGAAGCA GATCATCAGC CTGGCGACCA TCCAGTCGCC GCTGGGCAAC CAGTTCCGCA TCACCGGCCT CGACGGTCCG GGCGAGTCCT CCGAACTGGC CCTGCTGCTG CGCGCCGGCG GCCTTGCCGC GCCGATGTAC TTCGCCGAGG AGCGTACCAT CGGCCCGAGC CTGGGCGCGG ACAACATCGC CAAGGGTATC GACGCGTCGC TGTGGGGCAT GGTCTTCGTG TCGCTGTTCA TCATCGTCAT CTACCGCTTC TTCGGCGTGA TCGCCACCGT TGCGCTGGCT TTCAACATGG TCATGCTGGT GGCGCTCATG TCGATCCTCG GCGCGACCCT GACCCTGCCT GGCATCGCCG GTATCGTGCT GACCATGGGC ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGGATAC GCGAGGAGCT GGCCAATGGC ATGTCGGTCC AGCGGGCGAT CCACGAAGGC TTCAACCGCG CCTTCACCGC GATCCTCGAC GCCAACCTGA CCTCGCTGCT GGTCGGCGGC ATCCTCTACG CCATGGGCAC CGGCCCGGTG AAAGGTTTCG CCGTGACCAT GTCGCTCGGC ATCATCACCT CGATGTTCAC GGCCATCCTG GTCACCCGCG CAATGGTCAA CCTGATCTTC GGCGGGCGTG ACTTCAAGAA GCTGTGGATC TAA
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Protein sequence | MLNKYPLWKY LLILAVLAVG FIYSAPNLYP DDPAVQISGA STALQVTQAD VDRAAKALSD AGIAVKADSL SKKGGLIRLV KQDDQLPAKE VVRRTLGDDY VVALNLAQTT PEWLRKLGGS PMKLGLDLSG GVHFLLEVDM DKAVDARLKV YESEVKSLLR KERVRYRSLP IQDRAIQLGF TDSESLDKAR SLIAKDFRDF EVVPEERNGL QVLRVALTQA KLAEIREYSI KQNLTTVRNR VNELGVSEPL VQRQGANRIV VELPGVQDTA EAKRILGKTA NLEFRLAAEP DALKSATETF EFREPRRPPV PLERGVIITG DQVTDASASF DENGRPQVNI RLDGHGGELM NRATRNNVGR SMAVVFIEQK PVTRYTKQMV DGVEKEVAVP AFKEEKQIIS LATIQSPLGN QFRITGLDGP GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNIAKGI DASLWGMVFV SLFIIVIYRF FGVIATVALA FNMVMLVALM SILGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELANG MSVQRAIHEG FNRAFTAILD ANLTSLLVGG ILYAMGTGPV KGFAVTMSLG IITSMFTAIL VTRAMVNLIF GGRDFKKLWI
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