Gene PSPA7_1174 details

Gene Information

• Locus tag: PSPA7_1174
• ID: 5356534
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: -
• Start bp: 1173899
• End bp: 1175914
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640810227
• Product: choline transporter
• Protein accession: YP_001346559
• Protein GI: 152985551
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGACTGACG CACAATCGCC CTCCACTACC CCCGCCACGC CCCCGCCGAT CCGCATGAAC 
CCACCGGTGT TCTACGGCGC GGCGGTCCTG ATCCTGCTGT TCGCCACGGT GGTCATAGGC 
TTTCCCCAGC GCGCCGGCGA ATGGCTGCTG GCCGCGCAGA CCTGGGCCTC GCAGACCGTC 
GGCTGGTACT ACCTGCTGGC GATGACCCTG TACCTGATCT TCGTGGTCGT CACCGCGCTC 
TCCGGCTACG GCAAGATCAA GCTCGGCGCC GACCACGACG AACCGGAATT CAGCTACCTG 
TCCTGGGCCG GCATGTTGTT CGCGGCCGGC ATCAGCATCA CCCTGTTCTT CTTCTGCGTG 
TCCGAGCCGC TGACCCACTT CCTCCAACCG CCGCAAGGCG AGGCCGGTAC CCAGGAAGCC 
GCGCGGCAGG CCATGGAACT GCTGTTCCTG CACTGGGGCC TGCACGGCTG GGGGGTGTTC 
GCCCTGGTGG CGATGGCCCT GGCCTATTTC GCCTATCGCC ACAACCTGCC GCTGGCCCTG 
CGCTCGGCGC TCTACCCGCT GATCGGCAAG CGGATCAACG GGCCGATCGG CTACACCGTG 
GACTGCTTCG GCATCATCGC CACGGTGTTC GGCCTCGGCG CCGACATGGG CTTCGGCGTA 
CTCCAGCTCA ACTCAGGACT GGACTACCTC TACGCCATCC CGCACACCCA CCCGGTGCAG 
ATGGTGCTCA TCGCGCTGAT GATGGGCGCG GCGATCTCGG TGGCGATCTC CGGGGTCGAC 
AAAGGCATCC GCATCCTCTC CGATATCAAC ATGCTGCTGG CCTGCAGCCT GCTGCTGTTC 
GTGCTGTTCG CCGGGCCGAC CCAGCACCTG CTCAACACCC TGGTGCAGAA CGTCGGCGAC 
TATCTCGGCC ACCTGCCGGG CAAGAGCTTC GACCTCTACG CCTACGGCGG CCCGAGCGAC 
TGGCTGGGCT CGTGGACGGT GTTCTACTGG GCCTGGTGGA TCGCCTGGGC GCCCTTCGTC 
GGCCTGTTCA TCGCGCGCAT CTCGCGCGGC CGGACGATCC GCGAATTCGT CTTCGGCGTG 
CTGTTCATCC CGCTCGGCTT CACCCTGGCG TGGATGTCGA TCTTCGGCAA CAGCGCCCTC 
GACCAGGCCC TCGGCGGCGC CAGCGAGCTC GGTCGGGTGG CCATCGAGCA ACCGTCGATG 
GCGCTCTACC AGATGCTCCA GAACTATCCC TGGAGCCGCA CGGTGATCAC CGTCACGGTA 
CTGGTCAGCT TCGTCTTCTT CGTCACCTCG GCGGATTCCG GGACCGTGGT CCTGTCCACC 
CTCTCCGCCC ACGGCGGCAA CGCCGACGAC GACGGGCCGA AGTGGCTACG GGTGTTCTGG 
GGCTCGGTCA CCGCGCTGGT CACCGGCGGG CTGCTGTTCG CCGGCAGCAT CGACGCGCTG 
AAGTCGGCGG TGGTGCTGAC CTCGCTGCCC TTCTCGCTGA TCCTGCTGCT GATGATGTGG 
GGCCTGCACA AGGCCTTCTA CCTGGAATCG CAGCGGCAAC GCGCGCGAAC CCACTCCCTG 
GCGCCGCTGA TGAGCGGCAA CGGCAAGCGC TCCGGCGGCT GGAAGCGGCG CCTTTCGCAG 
GCGGTGCACT TCCCCTCGCG GGACGAGGTG TATCGCTTCA TGAACGACGT GGTACGCCCG 
GCGATCAGCG AAGTCTCCGA AGTGTTCCGC GAGAAGGGCC TGGCGGTGGA CGCCCAGCTC 
GACCCGGGCA ACGCCTCGCT GAGCCTGGAG ATCGGCCATG GTGAACAGCA CCGCTTCCTC 
TACCAGGTGC TGATGCGCGG CTACTTCACC CCATCCTTCG CCCGCGCCGG CATGGGCGGC 
CTGCACCTGA AGAACCGCCG TTACTTCCGC GCCGAGGTGC ACCTCGCCGA GGGCAGCCAG 
GACTACGACC TGATGGGCTA CACCAGGGAG CAGATCATCA ACGACATGCT CGACCAGTAC 
GAGCGGCACC TGCAATTCCT TCACCTGGTG CGTTGA 

 

Protein sequence

MTDAQSPSTT PATPPPIRMN PPVFYGAAVL ILLFATVVIG FPQRAGEWLL AAQTWASQTV 
GWYYLLAMTL YLIFVVVTAL SGYGKIKLGA DHDEPEFSYL SWAGMLFAAG ISITLFFFCV 
SEPLTHFLQP PQGEAGTQEA ARQAMELLFL HWGLHGWGVF ALVAMALAYF AYRHNLPLAL 
RSALYPLIGK RINGPIGYTV DCFGIIATVF GLGADMGFGV LQLNSGLDYL YAIPHTHPVQ 
MVLIALMMGA AISVAISGVD KGIRILSDIN MLLACSLLLF VLFAGPTQHL LNTLVQNVGD 
YLGHLPGKSF DLYAYGGPSD WLGSWTVFYW AWWIAWAPFV GLFIARISRG RTIREFVFGV 
LFIPLGFTLA WMSIFGNSAL DQALGGASEL GRVAIEQPSM ALYQMLQNYP WSRTVITVTV 
LVSFVFFVTS ADSGTVVLST LSAHGGNADD DGPKWLRVFW GSVTALVTGG LLFAGSIDAL 
KSAVVLTSLP FSLILLLMMW GLHKAFYLES QRQRARTHSL APLMSGNGKR SGGWKRRLSQ 
AVHFPSRDEV YRFMNDVVRP AISEVSEVFR EKGLAVDAQL DPGNASLSLE IGHGEQHRFL 
YQVLMRGYFT PSFARAGMGG LHLKNRRYFR AEVHLAEGSQ DYDLMGYTRE QIINDMLDQY 
ERHLQFLHLV R