| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_0831 |
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| Symbol | rpoC |
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| ID | 5358580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | + |
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| Start bp | 824340 |
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| End bp | 828539 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640809885 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001346217 |
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| Protein GI | 152983690 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAGACT TGCTTAATCT GTTGAAAAAC CAGGGTCAAA TCGAAGAGTT CGATGCCATC
CGTATTGGCC TGGCTTCGCC CGAGATGATT CGTTCCTGGT CTTTCGGCGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACCTTCAAG CCGGAGCGCG ACGGCCTGTT CTGCGCCAAG
ATCTTCGGCC CGGTGAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGTGGTGTGA TCTGCGAGAA GTGCGGCGTG GAAGTCGCCC TGGCCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGAGCT GGCTTCGCCG GTCGCCCACA TCTGGTTCCT GAAGTCGCTG
CCGTCCCGTA TCGGCCTGCT GCTGGACATG ACCCTGCGCG ATATCGAGCG CGTGCTCTAT
TTCGAGAGCT ACGTGGTGAT CGATCCGGGC ATGACCACCC TGGAAAAGGG CCAACTGCTG
AACGACGAGC AATACTTCGA GGCTCTCGAG GAGTTCGGTG ACGATTTCGA TGCTCGCATG
GGCGCCGAAG CCGTTCACGA ACTGCTCAAC GCCATCGACC TGGAGCACGA GATCGGCCGC
CTGCGCGAAG AGATTCCGCA GACCAACTCG GAAACCAAGA TCAAGAAGCT GTCCAAGCGC
CTGAAGCTGA TGGAAGCCTT CCAGGGCTCC GGCAACAAGC CCGAGTGGAT GGTCCTGACC
GTCCTGCCGG TGCTGCCGCC GGACCTGCGC CCGCTGGTTC CGCTGGACGG CGGTCGCTTC
GCGACTTCCG ACCTGAACGA CCTATATCGT CGGGTGATTA ACCGTAACAA CCGCCTGAAG
CGCCTGCTCG ACCTGGCCGC TCCGGACATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAAGCCGTCG ACGCCCTGCT CGACAACGGC CGTCGCGGCC GGGCCATCAC CGGCTCGAAC
AAGCGTCCGC TGAAGTCGCT GGCCGACATG ATCAAGGGCA AGCAAGGTCG CTTCCGTCAG
AACCTGCTCG GCAAGCGCGT GGACTACTCC GGTCGTTCCG TGATCACCGT GGGCCCGACC
CTGCGCCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCCC TGGAGCTGTT CAAGCCGTTC
ATCTTCGGCA AGCTGGAAGG TCGTGGCATG GCCACCACCA TCAAGGCCGC CAAGAAGATG
GTCGAGCGCG AGCTGCCCGA GGTCTGGGAC GTTCTCGCCG AGGTCATCCG CGAGCATCCG
GTTCTCCTGA ACCGTGCGCC GACCCTGCAC CGTCTGGGCA TCCAGGCGTT CGAGCCGGTC
CTCATCGAAG GCAAGGCGAT CCAGCTGCAC CCGCTGGTCT GCGCCGCGTA CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTGCACGTT CCGCTGACCC TCGAGGCCCA GCTGGAAGCG
CGCGCGCTGA TGATGTCCAC CAACAACATC CTGTCGCCCG CCAACGGCGA GCCGATCATC
GTTCCGTCGC AGGACGTGGT AATGGGTCTG TACTACATGA CCCGTGAAGC GATCAATGCG
AAGGGCGAGG GTATGGCCTT CGCCGACCTG CAGGAAGTCG ACCGCGCCTA CCGCAGCGGC
CAGGCGTCCC TGCACGCCCG GGTGAAGGTA CGCATCAACG AGAAGGTCAA GGGCGAGGAC
GGTCAGCTGA CCGCCAATAC CCGCATCGTC GACACCACCG TCGGCCGCGC GCTGCTGTTC
CAGGTCGTTC CGGCCGGTCT GCCGTTCGAC GTGGTCAACC AGTCGATGAA GAAGAAGGCG
ATCTCCAAGC TGATCAACCA CTGCTACCGC GTGGTGGGTC TGAAGGACAC CGTCATCTTC
GCCGACCAGC TGATGTACAC CGGTTTCGCC TATTCGACCA TTTCCGGCGT CTCCATCGGC
GTCAACGACT TCGTCATCCC GGACGAGAAG GCGCGCATCA TCAACGCCGC CACCGACGAA
GTGAAGGAAA TCGAGAGCCA GTACGCCTCC GGCCTGGTAA CCCAGGGCGA GAAGTACAAC
AAGGTGATCG ACCTGTGGTC GAAGGCCAAC GACGAAGTGT CCAAGGCGAT GATGGCCAAC
CTCTCGAAAG AGAAGGTCGT CGACCGCGAG GGCAAGGAAG TCGACCAGGA GTCCTTCAAC
TCCATGTACA TGATGGCCGA CTCCGGTGCG CGGGGTTCCG CGGCCCAGAT CCGCCAGCTG
GCGGGCATGC GCGGCCTGAT GGCCAAGCCG GACGGCTCGA TCATCGAGAC CCCGATCACC
GCTAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TCTCCACCCA CGGTGCGCGT
AAGGGTCTGG CGGATACCGC GCTGAAGACC GCGAACTCCG GTTACCTGAC CCGTCGCCTG
GTCGACGTGG CCCAGGACCT GGTGGTGACC GAGATCGATT GTGGCACCGA GCACGGCCTG
CTGATGTCGC CGCACATCGA AGGCGGCGAC GTGGTCGAGC CGCTCGGCGA GCGCGTGCTC
GGCCGCGTGA TCGCGCGTGA CGTGTTCAAG CCGGGCAGCG ACGAAGTCAT CGTGCCGGCC
GGTACCCTGA TCGACGAGAA GTGGGTCGAT TTCCTCGAGG TGATGAGCGT CGACGAAGTC
GTCGTGCGTT CGCCGATCAC CTGCGAAACC CGTCATGGCA TCTGCGCCAT GTGCTACGGT
CGCGACCTGG CCCGTGGCCA TCGCGTCAAC ATCGGTGAAG CGGTCGGCGT CATCGCCGCG
CAGTCCATCG GTGAGCCGGG CACCCAGCTG ACCATGCGTA CCTTCCACAT CGGTGGTGCG
GCCAGCCGGA CCTCGGCTGC CGACAACGTC CAGGTGAAGA ACGGCGGCAC CATCCGCCTG
CACAACCTGA AGCATGTGGT GCGTGCCGAC GGCGCGCTGG TCGCGGTATC GCGTTCCGGC
GAGCTGGCGG TCGCCGACGA CTTCGGTCGC GAGCGCGAGC GCTACAAGCT GCCGTACGGT
GCGGTGATTT CGGTCAAGGA AGGTGACAAG GTCGACCCGG GCGCCATCGT CGCCAAGTGG
GACCCGCACA CCCACCCGAT CGTCACCGAG GTGGACGGTA CCGTGGCCTT CGTGGGCATG
GAGGAGGGCA TTACCGTCAA GCGTCAGACC GACGAACTGA CCGGCCTGAC CAACATCGAA
GTGATGGATC CGAAAGACCG TCCGGCTGCC GGCAAGGACA TCCGTCCGGC CGTGAAGCTG
ATCGATGCCG CGGGCAAGGA CCTGCTGCTG CCGGGTACCG ACGTACCGGC GCAGTACTTC
CTGCCGGCCA ACGCCCTGGT CAACCTGACC GACGGCGCCA AGGTGAGCAT CGGTGACGTT
GTCGCGCGTA TTCCGCAGGA AACCTCGAAG ACCCGCGACA TCACCGGTGG TCTGCCGCGC
GTTGCCGACC TGTTCGAGGC CCGTCGTCCG AAAGAGCCTT CGATCCTGGC GGAAATCAGC
GGCACCATCT CCTTCGGCAA GGAGACCAAG GGCAAGCGCC GTCTGGTCAT CACGCCGAAC
GATGGCAGCG ATCCGTACGA GGAGCTGATT CCGAAGTGGC GTCACCTGAA CGTGTTCGAA
GGCGAACAGG TGAACCGCGG CGAAGTCATC TCCGACGGCC CGAGCAACCC GCACGACATC
CTGCGCCTGC TGGGCGTGAG TTCGCTGGCG AAGTACATCG TCAACGAGAT CCAGGACGTC
TACCGCCTGC AGGGCGTGAA GATCAACGAC AAGCACATCG AGACCATCCT GCGTCAGATG
CTGCGCAAGG TCGAAGTCAG CGAGTCCGGT GATTCCAGCT TCATCAAAGG CGACCAGGTG
GAACTCACCC AGGTGCTGGA AGAGAACGAA CAGCTCGGTA CCGAGGACAA GTTCCCGGCC
AAGTACGAAC GCGTTCTGCT GGGTATCACC AAGGCCTCCC TGTCGACCGA GTCGTTCATC
TCCGCGGCGT CGTTCCAGGA GACCACCCGC GTCCTCACCG AAGCGGCGGT CACCGGCAAG
CGCGACTTCC TGCGCGGCCT GAAGGAGAAC GTGGTCGTGG GTCGCCTGAT CCCGGCCGGT
ACCGGTCTGG CTTACCACAG CGAGCGCAAG CGTCAGCGCG ACCTCGGCAA GCCGCAGCGT
GTGAGTGCCA GCGAGGCGGA AGCCGCACTG ACCGAAGCGC TGAACTCGAG CGGTAACTAA
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| Protein sequence | MKDLLNLLKN QGQIEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLLLDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVHELLN AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNKPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEGRGM ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVMGL YYMTREAINA KGEGMAFADL QEVDRAYRSG
QASLHARVKV RINEKVKGED GQLTANTRIV DTTVGRALLF QVVPAGLPFD VVNQSMKKKA
ISKLINHCYR VVGLKDTVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIINAATDE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEKVVDRE GKEVDQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTEHGL LMSPHIEGGD VVEPLGERVL
GRVIARDVFK PGSDEVIVPA GTLIDEKWVD FLEVMSVDEV VVRSPITCET RHGICAMCYG
RDLARGHRVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADNV QVKNGGTIRL
HNLKHVVRAD GALVAVSRSG ELAVADDFGR ERERYKLPYG AVISVKEGDK VDPGAIVAKW
DPHTHPIVTE VDGTVAFVGM EEGITVKRQT DELTGLTNIE VMDPKDRPAA GKDIRPAVKL
IDAAGKDLLL PGTDVPAQYF LPANALVNLT DGAKVSIGDV VARIPQETSK TRDITGGLPR
VADLFEARRP KEPSILAEIS GTISFGKETK GKRRLVITPN DGSDPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSNPHDI LRLLGVSSLA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEVSESG DSSFIKGDQV ELTQVLEENE QLGTEDKFPA KYERVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDFLRGLKEN VVVGRLIPAG TGLAYHSERK RQRDLGKPQR
VSASEAEAAL TEALNSSGN
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