Gene PSPA7_0718 details

Gene Information

• Locus tag: PSPA7_0718
• Symbol: rpoD
• ID: 5357614
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: -
• Start bp: 721805
• End bp: 723658
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640809772
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_001346113
• Protein GI: 152984199
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGGAA AAGCGCAACA GCAATCTCGT CTGAAAGAGT TGATCGCCCG CGGTCGTGAG 
CAGGGTTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CGGAGGATAT TTCCGATCCG 
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGACA 
GCCCCGGATG CGGATGCCCT GCTGCTGGCC GAGGCGGATA CCGACGAAGC CGCAGCGGAA 
GAAGCCGCAG CGGCCCTGGC CGCGGTGGAA AGCGACATCG GTCGCACCAC CGACCCGGTG 
CGCATGTACA TGCGCGAAAT GGGTACCGTG GAACTGCTGA CCCGCGAAGG CGAGATCGAA 
ATCGCCAAGC GCATCGAGGA AGGCATCCGC GAAGTGATGA GCGCCATCGC CCAGTTCCCG 
GGCACGGTGG ACAGCATCCT GGCCGACTAC AACCGCATCG TCGCCGAGGG CGGACGCCTG 
TCCGACGTCC TCAGCGGCTA CATCGATCCC GATGATGGCA GCCTGCCCGC CGAAGAGGTG 
GAGCCGGTCA ACCTGAAGGA CGATTCCGCC GACTCGAAAG AGAAGGACGA TGAGGAAGAG 
GAAAGCGACG ACAACAGCGA TAGCGACGAC GAAGGTGACG GCGGTCCGGA CCCGGAAGAA 
GCCCGCCTGC GTTTCACCGC CGTTTCCGAA CAGCTCGACA AGGCCAAGAA GGCCCTGAAG 
AAGCACGGTC GCGGCAGCAA GCAGGCCACC GCCGAGCTGA CCGGCCTGGC CGAGCTGTTC 
ATGCCGATCA AGCTGGTGCC CAAGCAGTTC GACGCCCTGG TCGCCCGCGT GCGCTCCGCC 
CTGGAAGGCG TTCGCGCCCA GGAACGCGCC ATCATGCAGC TCTGCGTGCG TGACGCGCGC 
ATGCCGCGAG CCGACTTCCT GCGCCTGTTC CCGAACCACG AGACCGACGA GAAGTGGGTC 
GACAGCGTTC TGAAGAGCAA GCCGAAGTAC GCCGAGGCCA TCGAGCGCCT GCGCGACGAC 
ATCCTGCGCA ACCAGCAGAA GCTGGCGGCC CTGGAAAGCG AAGTCGAGCT GACCGTCGCC 
GAGATCAAGG AAATCAACCG CGCGATGTCG ATCGGCGAAG CCAAGGCTCG CCGGGCGAAG 
AAGGAAATGG TCGAGGCCAA CCTGCGCCTG GTCATCTCCA TCGCCAAGAA GTACACCAAC 
CGCGGCCTGC AGTTCCTCGA CCTGATCCAG GAAGGCAACA TCGGCCTGAT GAAGGCGGTG 
GACAAGTTCG AATACCGTCG CGGCTACAAG TTCTCCACCT ACGCCACCTG GTGGATCCGC 
CAGGCGATCA CCCGTTCGAT CGCCGACCAG GCACGCACCA TCCGCATCCC GGTGCACATG 
ATCGAGACGA TCAACAAGCT CAACCGCATC TCCCGCCAGA TGCTTCAGGA AATGGGCCGC 
GAGCCCACCC CGGAAGAGCT TGGCGAGCGC ATGGACATGC CTGAGGACAA GATCCGCAAG 
GTACTGAAGA TCGCCAAGGA GCCGATCTCC ATGGAAACCC CGATCGGTGA CGACGAAGAC 
TCGCACCTGG GCGATTTCAT CGAGGACTCC ACCATGCAGT CGCCGATCGA GATGGCGACC 
AGCGAGAGCC TCAAGGAATC CACCCGCGAA GTGCTCGCCG GCCTCACCGC CCGGGAAGCC 
AAGGTGCTGC GCATGCGCTT CGGCATCGAC ATGAACACCG ACCATACCCT CGAGGAAGTC 
GGCAAGCAGT TCGATGTGAC CCGCGAGCGG ATCCGCCAGA TCGAAGCCAA GGCGCTGCGC 
AAGCTGCGCC ACCCCTCGCG AAGCGAGCAC CTGCGCTCCT TCCTCGACGA GTGA 

 

Protein sequence

MSGKAQQQSR LKELIARGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFET 
APDADALLLA EADTDEAAAE EAAAALAAVE SDIGRTTDPV RMYMREMGTV ELLTREGEIE 
IAKRIEEGIR EVMSAIAQFP GTVDSILADY NRIVAEGGRL SDVLSGYIDP DDGSLPAEEV 
EPVNLKDDSA DSKEKDDEEE ESDDNSDSDD EGDGGPDPEE ARLRFTAVSE QLDKAKKALK 
KHGRGSKQAT AELTGLAELF MPIKLVPKQF DALVARVRSA LEGVRAQERA IMQLCVRDAR 
MPRADFLRLF PNHETDEKWV DSVLKSKPKY AEAIERLRDD ILRNQQKLAA LESEVELTVA 
EIKEINRAMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV 
DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI SRQMLQEMGR 
EPTPEELGER MDMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDS TMQSPIEMAT 
SESLKESTRE VLAGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER IRQIEAKALR 
KLRHPSRSEH LRSFLDE