Gene PSPA7_0160 details

Gene Information

• Locus tag: PSPA7_0160
• ID: 5356637
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: +
• Start bp: 174970
• End bp: 176829
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640809214
• Product: hypothetical protein
• Protein accession: YP_001345556
• Protein GI: 152988188
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCCGC GCCTGCTCGA GTACTACAAC CAGGAACTGC AACACATCCG CGAAAGCGCC 
GCGGAGTTCG CCGAGGAATT CCCGAAGATC GCCGGGCGCC TGTCGCTGTC CGGCTTCGAG 
TGCGCCGACC CCTATGTCGA GCGCCTGCTG GAAGGCTTCG CCTATCTCAC CGCGCGGGTC 
CAGCTGAAGC TCGACGCGGA ATACCCGACC TTCACCCACA ACCTGCTGGA AATCGCCTAT 
CCGCACTACC TGGCGCCGAC CCCCTCGATG ACCGTGGTGC AGTTGCGCCC GGACCCCAAC 
GAAGGCGCCC TGAGCAGCGG TTTCAGCGTC GAGCGCGGGG CCTCCCTGCG TGGCCAGCTC 
GGCCCCGAGG ACCAGACCGC CTGCGAGTAC CGCACCGCGC ACCCGGTGAC CCTGTGGCCG 
CTGGAAGTGG TCCAGGCCGA CTACTTCGGC AACCCGGCCG CGGTGCTCGG GCGTCTCGCC 
GCCAGCGAGC CGCGGGCCAA GGCCGGCCTG CGCATCCGCC TGCGCAGCGG CGCCGGCATT 
CCGTTCCACA GCCTGTCGCT GGACGCCCTG CCGCTCTACC TGCACGGGGC CGACGAACAG 
CCCTATCGTC TCTACGAGCA GTTGCTCGGC AACGCCTGCG CGGTGTTCGT CCGCGCCCCG 
GACAACGCCT GGGTCGAGCG CCTGCCGGCG AGCAGCCTGC GGCCGCGCGG CTTCGACGAC 
GAGGACGCGC TGCTGCCGGT GGTGCCGCGG GCGTTCCAGG GCTACCGCCT GCTGCAGGAA 
TACTTCGCCC TGCCGGCGCG CTTCCTGTTC GTCGAGTTCT CCGGGCTGAA TCGCGCCCTG 
CGTCGCTGCG CCGGCGAGGA ACTGGAGCTG ATCGTGCTGT TCGGCAAGCA CGACGCGCGC 
CTGGAGGGCA CGGTGGACGC CGAGCAACTG GTGCCGTTCT GCACCCCGGC GATCAACCTG 
TTCCCGCGTC GCTGCGACCG CATCCACCTG TCCGACCGGG TCAACGAGCA CCATGTGATC 
GTCGACCGCA CCCGGCCGCT GGACTTCGAG GTGCATTCGC TGCAGCAGGT CAGCGGCCAC 
GGCAGCGGTC CGGAGCAACC CTTCCAGCCG TTCTACGCGG TGCGCGATCC GGCGCGCTAC 
GGCCGCGAGC AGGCCTACTT CAGCGTGCGC CGCGAACCGC GCGTGCTGTC CAGCAAGCAG 
CGGCGCAAGG GCCCACGTTC GACCTATGTC GGCAGCGAGA CCTTCGTCGC CCTGGTCGAC 
GCCAGCCAGG CGCCCTATCG CCACGACCTG CGCCAGCTCG GCATCGCCGC GCTGTGCACC 
AACCGCGACC TGCCGCTGTT CATGCCGATC GGCGCGCACA GGAGCGACTT CACCCTGGAG 
GACAGCGCGC CGGTCATGCA GGTGCGCTGC CTCGCCGGAC CGAGCCGGCC GCGCGCCAGC 
CGTGCCCACG ATGCCAGCGC CTGGCGGCTG ATCAGCCAGC TGTCGCTGAA CTACCTGTCG 
CTGGCCGAGC GCGGCCAGGG CGCCGCCGCT CTGCGCGAAC TGCTGCGGCT CTACGGCGAC 
AGCGGCGATC CGGCGCTGCA GTTGCAGATC GAGGGCCTGC GCGAGGTCAG CAGCAAGCCC 
TGCACGCGGC GCCTGCCGAT GCCCGGGCCG ATCGTCTTCG GCCGCGGCCT GGAGATTACC 
CTGGACTTCG ACGAGAACGC GTTCCGCGGT ACCGGGGTGT TCCTCCTCGG CGCGGTGTTC 
GAGCGCTTCC TGGCACGCTA CGTGTCGATC AACAGCTTTA CCGAGACGGT GCTGCGCACC 
GGCGAACGGG GCGAGGTGAT GAGATGGCAG GCGAAGCCGG GCAGCCGTCC GAACCTCTGA 

 

Protein sequence

MNPRLLEYYN QELQHIRESA AEFAEEFPKI AGRLSLSGFE CADPYVERLL EGFAYLTARV 
QLKLDAEYPT FTHNLLEIAY PHYLAPTPSM TVVQLRPDPN EGALSSGFSV ERGASLRGQL 
GPEDQTACEY RTAHPVTLWP LEVVQADYFG NPAAVLGRLA ASEPRAKAGL RIRLRSGAGI 
PFHSLSLDAL PLYLHGADEQ PYRLYEQLLG NACAVFVRAP DNAWVERLPA SSLRPRGFDD 
EDALLPVVPR AFQGYRLLQE YFALPARFLF VEFSGLNRAL RRCAGEELEL IVLFGKHDAR 
LEGTVDAEQL VPFCTPAINL FPRRCDRIHL SDRVNEHHVI VDRTRPLDFE VHSLQQVSGH 
GSGPEQPFQP FYAVRDPARY GREQAYFSVR REPRVLSSKQ RRKGPRSTYV GSETFVALVD 
ASQAPYRHDL RQLGIAALCT NRDLPLFMPI GAHRSDFTLE DSAPVMQVRC LAGPSRPRAS 
RAHDASAWRL ISQLSLNYLS LAERGQGAAA LRELLRLYGD SGDPALQLQI EGLREVSSKP 
CTRRLPMPGP IVFGRGLEIT LDFDENAFRG TGVFLLGAVF ERFLARYVSI NSFTETVLRT 
GERGEVMRWQ AKPGSRPNL