| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_0020 |
|---|
| Symbol | def |
|---|
| ID | 5357812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 20944 |
|---|
| End bp | 21450 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640809074 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001345416 |
|---|
| Protein GI | 152988653 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.139599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCC TGAACATTCT CGAATTCCCC GATCCGCGCC TGCGGACCAT CGCCAAACCG
GTGGAGGTGG TCGACGACGC GGTGCGCCAG CTGATCGACG ACATGTTCGA AACCATGTAC
GAAGCCCCGG GCATCGGCCT CGCCGCGACC CAGGTCAACG TGCACAAGCG CATCGTGGTC
ATGGACCTCA GCGAGGACAA GTCCGAGCCG CGGGTGTTCA TCAACCCCGA GTTCGAGCCG
CTGACCGAGG AAATGGACCA GTACCAGGAA GGCTGCCTGT CGGTGCCCGG TTTCTACGAG
AACGTGGACC GTCCGCAGAA GGTTCGGATC AAGGCCCTGG ACCGCGACGG CAAGCCGTTC
GAGGAAGTCG CCGAAGGCCT GCTGGCGGTA TGCATCCAAC ACGAGTGCGA TCACCTCAAC
GGCAGGCTGT TCGTCGATTA CCTGTCCACC CTCAAGCGCG ACCGCATCCG CAAGAAGCTG
GAAAAGCAGC ATCGACAGCA GGCGTGA
|
|---|
| Protein sequence | MAILNILEFP DPRLRTIAKP VEVVDDAVRQ LIDDMFETMY EAPGIGLAAT QVNVHKRIVV
MDLSEDKSEP RVFINPEFEP LTEEMDQYQE GCLSVPGFYE NVDRPQKVRI KALDRDGKPF
EEVAEGLLAV CIQHECDHLN GRLFVDYLST LKRDRIRKKL EKQHRQQA
|
|---|
| |