| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_4325 |
|---|
| Symbol | |
|---|
| ID | 5367570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 4909109 |
|---|
| End bp | 4909975 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640806731 |
|---|
| Product | RNA polymerase factor sigma-32 |
|---|
| Protein accession | YP_001343155 |
|---|
| Protein GI | 152998320 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.451736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAG CTCTCCAGCC TACGGATATG ATGATTCCTG GTCAGAACCT AGAGTCTTAC
ATACAAGCCG TCAGCAGAAT TCCGATTTTA ACCGCAGACG AAGAAAAAGC GTTGGCGGAA
CGTCTTTATT ATCAAGAAGA CCTTGAAGCT GCGCGTACCT TGGTTATGTC GCACTTAAGA
TTTGTTGTAC ATATTGCGAA AAGTTATTCT GGATATGGTT TAGCGCAAGG CGACCTTATT
CAAGAAGGTA ACGTTGGCTT GATGAAAGCG GTTAAACGCT TTAACCCAGA AGTCGGTGTT
CGCCTTGTTT CTTTTGCTGT GCATTGGATT AAAGCCGAGA TTCATGAGTT TATTCTGAAA
AACTGGCGCA TTGTTAAAGT TGCGACGACA AAAGCACAAC GCAAAATGTT CTTTAATTTG
CGTAGCGCGA AAAAGTCCTT GTCTTGGTTT AGTAATTCAG AAGTAGAGTC GGTTGCTAGT
GATTTAGGAG TGACACCTGA AGTGGTTCGT CAAATGGAAG GGCGCTTAAG TTCTTCTGAT
ATGGCGTTTG ATGCTTCTGC AGATGACGAT GATGACAGTG CTTTTCAAGC GCCATCTCAA
TATCTAGAAG ACCATCGTTC AGATCCTGCA ACCTTGCTTG AAAATGGTAA CTGGGAGGAA
GACTCCAATC AGCGCTTAGA AGTCGCTATG GCGGATCTTG ATGAGCGTAG CCGAAATATT
CTAGTGCAAC GATGGTTGTC TGATGCAAAA TCTACCTTGC ATGAATTGGC CGATGAATAC
GGTGTTTCTG CTGAGCGTAT TCGCCAGCTT GAAAAGAACG CAATGAAGAA AATTCGTCTT
GCAATGGGGG ATGGTCAGTT TGACTGA
|
|---|
| Protein sequence | MGKALQPTDM MIPGQNLESY IQAVSRIPIL TADEEKALAE RLYYQEDLEA ARTLVMSHLR
FVVHIAKSYS GYGLAQGDLI QEGNVGLMKA VKRFNPEVGV RLVSFAVHWI KAEIHEFILK
NWRIVKVATT KAQRKMFFNL RSAKKSLSWF SNSEVESVAS DLGVTPEVVR QMEGRLSSSD
MAFDASADDD DDSAFQAPSQ YLEDHRSDPA TLLENGNWEE DSNQRLEVAM ADLDERSRNI
LVQRWLSDAK STLHELADEY GVSAERIRQL EKNAMKKIRL AMGDGQFD
|
|---|
| |