| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_4283 |
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| Symbol | rpoB |
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| ID | 5364768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Marinomonas sp. MWYL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009654 |
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| Strand | - |
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| Start bp | 4848183 |
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| End bp | 4852283 |
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| Gene Length | 4101 bp |
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| Protein Length | 1366 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640806681 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001343113 |
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| Protein GI | 152998278 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.644597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000012374 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGTAAGG ATTTCGGTAA ACTGCCGCCC
GTTTTGGATG TGCCATACTT GCTGGCAATT CAGCTTGAAT CCTACCGTAA TTTTCTGCAG
GAAGGTAAAA GCCTTGCAGA GCGTGGGGAA TTAGGTCTGC ATGGGGCCTT TAAATCTGTC
TTTCCAATGG TCAGCTTTTC CGGCAATGCG GCGCTAGAAT ACGTCGATTA CCGTTTAGGC
AAGCCAGTTT TTGATGTTAA AGAGTGTCAG TTGCGTGGTG TTACTTACGC GGCACCTTTA
CGTGTTCGTG TACGACTTAT CATTTATGAT AAAGAGTCGT CCAATAAAGC AATCAAAGAC
ATTCGCGAGC AAGAAGTCTA CATGGGCGAA ATTCCGCTTA TGACAGACAA TGGTACCTTT
GTAATCAACG GGACTGAGCG TGTTATTGTA TCTCAATTGC ACCGTTCTCC TGGTGTGTTC
TTCGACCACG ATCGTGGTAA GACACACTCT TCAGGCAAGT TACTACATTC TGCTCGTATT
ATTCCTTACC GCGGTTCATG GTTGGACTTC GAGTTTGATC CAAAAGATTG CGTATTTGTT
CGTATTGACC GTCGTCGTAA GCTGCCGGCA ACTATTTTGT TGCGCGCTTT GGGCTACGGA
ACAGAGCAAA TCCTAGATAC TTTCTTTGAC TCTACTCGTT TCTATTTGAA ACGCGATGGT
TTTGAAATGG ATCTAGTTGC AAATCGTCTA CGTGGCGAGA CTGCACTGTT TAATATTGCT
GATGCGAATG GCGAACTGAT CGTAGAAGAA GGTCGTCGTA TCACTGCTAA GCACATTCGT
GTGATGGAAA AATCAGGCCT TGAGCGTCTA TCTGTGCCGC TTGAGTATAT GCTTGGTAAA
GTAACAGCTA AAAACTTGGT TCACCCTGCG ACGGGTGAGC TGATTGCGGA AGCAAACACT
GAGCTGTCTG TTGATTTACT AGAGGCGTTG GTTTCTTCTG GTATTACTGA AGTTGATACG
CTTTATACGA ATGATTTGGA TAATGGTCCA TTTATTTCTG ACACGCTTCG TATCGATCCA
ACTAGCAATC AGTTGGAAGC TTTGGTTGAA ATCTATCGCA TGATGCGTCC TGGTGAGCCA
CCGACCAAAG AGTCGGCTGA AGGCTTGTTC CAAGGCTTGT TCTTCTCAGA AGATCGTTAT
GATCTATCTG GCGTTGGTCG AATGAAATTC AACCGTCGTT TAGGTCGTGA AGAAGATACT
GGTGCTGGTG TTCTAGATAA TGATGACATC GTTGCTGTTC TAAAAACCTT GCTAGATATC
CGTAACGGTA ACGGCATGGT TGATGACATC GATCACTTGG GTAACCGTCG AGTTCGTTCT
GTTGGCGAAA TGGCCGAGAA CCAATTCCGT GTTGGTCTGG TACGTGTTGA GCGTGCAGTG
AAAGAACGTT TGTCTATGGC GGAAGCTGAT GGCCTTATGC CACAAGACCT TTTGAATGCG
AAGCCTGTTG CTGCCGCAAT CAAAGAGTTC TTTGGTTCAA GCCAGTTGTC TCAGTTTATG
GACCAAAACA ACCCGCTATC TGAAGTAACG CATAAGCGTC GTGTTTCAGC GTTAGGGCCT
GGTGGTCTTA CTCGTGAGCG TGCAGGCTTT GAAGTACGTG ACGTACACGC TACTCACTAC
GGTCGTGTTT GTCCTATCGA AACGCCAGAA GGTCCAAACA TTGGTTTGAT CAACTCGCTA
TCTACTTATG CGCGTACTAA TAGCTACGGT TTCTTAGAAA CGCCATATCG TAAGATTGTA
GATGGTAAGC AGACGGACGA AACTGTTTAT GTTTCGGCGA TCGATGAAGC GAAATATGTT
ATTGCCCAAG CATCTGCAAA CGTAGATGCA GAAGGTCGTT TGGTTGATGA GTTGGTTCAG
GTGCGTCATA TGCACGAAAC CACTTTGATT CCAAAGGAAA AAGTTAACTT AATGGACGTG
TCTCCTCGTC AGGTTGTTTC TGTTGCGGCA TCTTTGATTC CGTTCCTAGA GCACGATGAT
GCTAACCGAG CTTTGATGGG TTCGAACATG CAACGTCAAG CCGTTCCAAC ACTTAAGGCT
GACAAGCCGG TTGTTGGTAC TGGTATGGAG AAAAACGTAG CAAAAGACTC TGGTGTTTGT
ATTGTTGCGA ATCGCGGCGG TGTGATTGAG TCTGTTGATG CAAGCCGTAT CGTTGTACGT
GTGAATTCAG AAGAAACGAT TGCTGGTGAA GCCGGTGTAG ATATCTACAA CCTAACTAAA
TACGTGCGTT CTAACCAGAA TACTTGTATT AACCAGCGTA CTTTGGTTAT GAAAGGTGAG
AGGATAGCAT CTGGCGATAT CATGGCCGAT GGTCCTTCTG TTGATATGGG TGAATTGGCG
CTTGGTCAAA ACATGCGTAT CGCTTTCATG CCTTGGAATG GTTTCAACTT CGAAGACTCG
ATTCTAGTTT CTGAACGTGT TGTAGAAGAA GATCGATTCA CTTCTATCCA TATTCAAGAG
TTAACGTGTG TTGCACGTGA TACTAAGCTT GGGCCAGAAG AGATTACTGC CGATATCCCT
AACGTGGGTG AAGGTGCGCT TTCTAAGTTG GATCAATCAG GTATCGTTTA CATCGGTGCA
GAAGTTGAGC CAGGCGATAT TCTAGTTGGT AAAGTGACGC CTAAGGGTGA AACACAGCTA
ACGCCTGAAG AGAAACTTTT GCGAGCGATC TTCGGTGAAA AAGCGTCTGA CGTAAAAGAT
ACGTCTCAAC GAGTTAAGAC TGGCACACGC GGTACTGTTA TCGACGTGCA AGTTTTCACT
CGTGATGGCA TCGAAAAAGA TGATCGTGCT AAGTTCATTG AAAAATCGCA GCTTGATCAA
GTTCGTAAAG ACTTGAACGA AGAGTTCCGT ATTGTTGAGA AAGCGACTTT CGAACGTCTA
GCTGAAGCCC TAATCGGCCA GCAAGCGGAA GGTGGTCCTG GTTTGGCTCG CAATGCGATT
ATTACGGAAG AATATTTGGC GAATCTAGAT CACCCTGAGT GGTTTAAAAT TCGTGTTGCT
AATGAAGACG CGAGTGAGCA GCTTGAAAAA GCGCAAGCCG CTTTGATTGA GCGCCGTAAA
GAGCTTGATG CGAAATTTGA AGATAAGAAA CGCAAGCTAC AAACAGGTGA TGATCTAGCA
CCAGGCGTTC TTAAAATCGT TAAAGTTTAT GTTGCCATTA AACGTCGCAT CCAGCCAGGT
GATAAAATGG CCGGTCGTCA TGGTAACAAA GGTGTAATTT CTAAAATTAT GCCAGTTGAA
GACATGCCGT ACGATGAAAA CGGTGATCCA GTTGATATCG TATTGAACCC ACTAGGTGTT
CCTTCACGTA TGAACGTTGG TCAGGTCCTG GAGACTCACT TAGGTGCAGC TTCTAAAGGC
TTGGGTCGTA AGATCAACGA AATGCTTGTT GTAGAGCGTG AGAAAGCAGA AGCGGTTGCA
GAACTGCGTA GCTTCCTTGG CGAAATCTAT AACGGCTACG AAGGCGATTT GCGTTGCGCT
CGTACAGAAG ATCTAGACAG CTTTACAGAC GAAGAAATTT TGACTTTGGC ATCCAACCTA
ACAGGTGGTG TTCCAATGGC GTCTGGTGCC TTTGATGGTG CAAAAGAGTC TGAAATTAAA
CGTATGTTGC GCTTAGCTGG AATCAACGAA AGTGGCCAAG TTAAATTGTT TAACGGCCGC
ACCGGTGATG CTTTTGAACG TCCAGTAACT GTTGGTTACA TGTACATGCT TAAGTTGAAC
CACTTGGTTG ACGACAAAAT GCACGCACGT TCTACTGGTT CTTACAGCTT GGTTACTCAG
CAGCCGCTGG GTGGTAAAGC TCAGTTCGGT GGACAGCGTT TCGGGGAGAT GGAGGTATGG
GCGCTAGAAG CATATGGTGC CGCTTACACG CTTCAAGAAA TGTTGACTGT TAAATCCGAT
GACGTGAATG GCCGTACTAA GATGTATAAA AACATCGTAG ATGGTGACCA CCGTATGGAA
CCTGGCATGC CTGAGTCCTT CAACGTGTTG GTGAAAGAGA TTCGTTCTCT TGGTATCGAT
ATCGAGCTGG AAAACGAATA A
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| Protein sequence | MAYSYTEKKR IRKDFGKLPP VLDVPYLLAI QLESYRNFLQ EGKSLAERGE LGLHGAFKSV
FPMVSFSGNA ALEYVDYRLG KPVFDVKECQ LRGVTYAAPL RVRVRLIIYD KESSNKAIKD
IREQEVYMGE IPLMTDNGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLHSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA TILLRALGYG TEQILDTFFD STRFYLKRDG
FEMDLVANRL RGETALFNIA DANGELIVEE GRRITAKHIR VMEKSGLERL SVPLEYMLGK
VTAKNLVHPA TGELIAEANT ELSVDLLEAL VSSGITEVDT LYTNDLDNGP FISDTLRIDP
TSNQLEALVE IYRMMRPGEP PTKESAEGLF QGLFFSEDRY DLSGVGRMKF NRRLGREEDT
GAGVLDNDDI VAVLKTLLDI RNGNGMVDDI DHLGNRRVRS VGEMAENQFR VGLVRVERAV
KERLSMAEAD GLMPQDLLNA KPVAAAIKEF FGSSQLSQFM DQNNPLSEVT HKRRVSALGP
GGLTRERAGF EVRDVHATHY GRVCPIETPE GPNIGLINSL STYARTNSYG FLETPYRKIV
DGKQTDETVY VSAIDEAKYV IAQASANVDA EGRLVDELVQ VRHMHETTLI PKEKVNLMDV
SPRQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLKA DKPVVGTGME KNVAKDSGVC
IVANRGGVIE SVDASRIVVR VNSEETIAGE AGVDIYNLTK YVRSNQNTCI NQRTLVMKGE
RIASGDIMAD GPSVDMGELA LGQNMRIAFM PWNGFNFEDS ILVSERVVEE DRFTSIHIQE
LTCVARDTKL GPEEITADIP NVGEGALSKL DQSGIVYIGA EVEPGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSQRVKTGTR GTVIDVQVFT RDGIEKDDRA KFIEKSQLDQ
VRKDLNEEFR IVEKATFERL AEALIGQQAE GGPGLARNAI ITEEYLANLD HPEWFKIRVA
NEDASEQLEK AQAALIERRK ELDAKFEDKK RKLQTGDDLA PGVLKIVKVY VAIKRRIQPG
DKMAGRHGNK GVISKIMPVE DMPYDENGDP VDIVLNPLGV PSRMNVGQVL ETHLGAASKG
LGRKINEMLV VEREKAEAVA ELRSFLGEIY NGYEGDLRCA RTEDLDSFTD EEILTLASNL
TGGVPMASGA FDGAKESEIK RMLRLAGINE SGQVKLFNGR TGDAFERPVT VGYMYMLKLN
HLVDDKMHAR STGSYSLVTQ QPLGGKAQFG GQRFGEMEVW ALEAYGAAYT LQEMLTVKSD
DVNGRTKMYK NIVDGDHRME PGMPESFNVL VKEIRSLGID IELENE
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