| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_4050 |
|---|
| Symbol | |
|---|
| ID | 5365615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 4577841 |
|---|
| End bp | 4578995 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640806443 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001342881 |
|---|
| Protein GI | 152998046 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAT ATAATCACGA ATACTGGATG GCGAAAGCCA TTCAACTGGC GAAAAAAGGC
CGCTATACCA CTCATCCAAA CCCACGAGTT GGTTGTGTGT TGGTTAAAGA TCAGCAAATT
ATCGGCCAAG GCTTTCATGT TAAAGCTGGA GAGGGCCACG CAGAAGTCAA TGCGTTGGCG
GATGCAAAGC ACGACGCGGT TGGTGCAACG GCTTACGTCA CCTTGGAACC TTGCAGCCAC
CAAGGTAAAA CTCCGCCTTG TGCCGATGCC TTGATTAAAG CGGGCGTGGC GCGTGTTGTT
TATGGTATGC AAGATCCAAA TCCAGAAGTG TCAGGCAACG GCTTAGCGAA AATCAAAAAA
GCCGGCATTG AAATTATTGG TCCTATTCTG GAATCTGATT GCGAAGCGCT GAATCCCGGT
TTTATTAAAC GCATGCGCGA AGGTCTTCCT TATGTGCGAG TGAAACTGGC TATGAGCATG
GATGGCCGTA CGGCTATGGA ATCTGGCGAA AGCCAATGGA TTACCGATTC AGCAGCGCGT
CTTGATGTGC AGCGTTTACG CGCCCAGAGT GATGCTATTG TGACAGGTAT TGGCTCGGTG
TTGGCAGATA ACCCAAGCAT GACAGTTCGC ATAGACAACG ATGACCAAGA AGCTGATCCG
AAAAGCGTGC GTCAGCCGAT TCGTGTGGTA ATGGACACGG CTTTGTCGAT TCTTCCAGAA
GCGAAAATTC TTTACCCAGC GAATCAAGCT TGGGTATTTT CGGTAGAAGA AGAGGTCGAA
GCAGAGCATT TAGAGTTGTT AACGAAAAAA GGCGTAACCG TGCGTTTTGC TCCCCGTGGC
GAAGATGGCC GACTAGACTT ACTAGATGCC ATGGAACAGC TTGCCGATGC AGGTATTAAT
GAAGTCTTGT TAGAAGCTGG CGCGGAATTA GCGGGTGGGT TTTTAGAAGC GGGTCTGATT
GACGAAATCA TTGTTTACAT GGCACCGAAA TTATTGGGCT CCAGCGCTCG TCCTTTGTTT
AAGTTGCCTT TAGATGTGAT GGACGAAGCG GTTGATTTGA CGCTTAAATC GGTCCGCCAA
GTTGGGCAAG ATGTGCGTTT GGTCTATATA CCAAAATACC TCGATGAAGA TTTTGAAGGC
GATTTTGACG AATAG
|
|---|
| Protein sequence | MTAYNHEYWM AKAIQLAKKG RYTTHPNPRV GCVLVKDQQI IGQGFHVKAG EGHAEVNALA
DAKHDAVGAT AYVTLEPCSH QGKTPPCADA LIKAGVARVV YGMQDPNPEV SGNGLAKIKK
AGIEIIGPIL ESDCEALNPG FIKRMREGLP YVRVKLAMSM DGRTAMESGE SQWITDSAAR
LDVQRLRAQS DAIVTGIGSV LADNPSMTVR IDNDDQEADP KSVRQPIRVV MDTALSILPE
AKILYPANQA WVFSVEEEVE AEHLELLTKK GVTVRFAPRG EDGRLDLLDA MEQLADAGIN
EVLLEAGAEL AGGFLEAGLI DEIIVYMAPK LLGSSARPLF KLPLDVMDEA VDLTLKSVRQ
VGQDVRLVYI PKYLDEDFEG DFDE
|
|---|
| |