| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_3919 |
|---|
| Symbol | |
|---|
| ID | 5368377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 4421061 |
|---|
| End bp | 4421930 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640806307 |
|---|
| Product | shikimate dehydrogenase substrate binding subunit |
|---|
| Protein accession | YP_001342751 |
|---|
| Protein GI | 152997916 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.509677 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACATA TAGGTCTAAT TGGTCAGGCT ATTGCCGCTT CTCGATCTCC TTCTTTACAC
ATGATGTTGG GTGAACTAAA GCAGTTGCCA GTGGATTATC AGTTGCAAGT GCCAGAAGAT
GATACGGCGG AATCCTTTAA CGTCAAGCTT GCTGAAATTC GTGCCTTAGG TTTTGTCGGC
ACTAATGTTA CTTTTCCTTA TAAACAAATC GCCATAGACA GCGCAGACGA AGTAAACGAC
GCGGTGAAGA AAGTCGGTGC GAGTAATACT TTGCTGCTAA AAGACGGCAA AGTGTGTGCT
TTTAATACGG ATTACACTGG TTTTATTCGC GGTTATAAAG GTCGAGTGGG ACATTCCCTC
GCTGGAAACG TGCCAGCGGG TAAAGTGCTG ATGATTGGTG CTGGTGGTGT GGGGCGAGCG
ATTGGTTTTG CCTTGTTTGA AGTGGGTGCG ACAGAAGTAT TAGTCACCGA TTTGAGCGAA
CGTAGCGCTC AGTCTTTGGT TGATGCTATT AATGAAGCCG GCTACAAGGC GCGTGTTGTT
GCCAAAGAAG ACATTGCAGA AGCCGCCGCA GAAGTAGATG GATTGGTAAA CTGTACACCT
GTAGGTCATT TGAAAAGTCC AGGCATGCCA TTGGCTGCGG AGCTGATTCA AGGACAAAAA
TGGGCATTTG ATGCGGTTTA TACGCCAATG GATACTGAAT TCTTAGTGGA AGCTAATAAA
AAAGGTCTGC AAATTGTGTC AGGCTTTGAT TTGTTCTTTT ATCAAGGTAT CGATGCCTTC
GAAATTTTCA CAGGACAGGA AATAACGGAT GTGAAACCTG TTTGGGACCA GTTCCGTGAA
AAATACAATG TCGTCAGTTC GTTGATCTAG
|
|---|
| Protein sequence | MLHIGLIGQA IAASRSPSLH MMLGELKQLP VDYQLQVPED DTAESFNVKL AEIRALGFVG
TNVTFPYKQI AIDSADEVND AVKKVGASNT LLLKDGKVCA FNTDYTGFIR GYKGRVGHSL
AGNVPAGKVL MIGAGGVGRA IGFALFEVGA TEVLVTDLSE RSAQSLVDAI NEAGYKARVV
AKEDIAEAAA EVDGLVNCTP VGHLKSPGMP LAAELIQGQK WAFDAVYTPM DTEFLVEANK
KGLQIVSGFD LFFYQGIDAF EIFTGQEITD VKPVWDQFRE KYNVVSSLI
|
|---|
| |