| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_2685 |
|---|
| Symbol | |
|---|
| ID | 5367982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | + |
|---|
| Start bp | 3032871 |
|---|
| End bp | 3034769 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640805060 |
|---|
| Product | TRAP transporter, 4TM/12TM fusion protein |
|---|
| Protein accession | YP_001341533 |
|---|
| Protein GI | 152996698 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.486304 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAC TTGTTCGTAG ATACATGCTA GATCCTTGTG CTTGGTTAGC ACTCGGGTTA
ATAGCTTACC AGTACTGGAT TTTATTTAAT CCAGACCTCC CCTTAGTCGA GCGTGCAACG
CATTTAGTAC TGACTTTAGC GATCGCTTTT CTTTCAACAC CCTTTTTAAA ATCCAATCCC
TCATCAACAC TAAACAAAGT TATTGCCGTA GCCATGTTTG CTTTGGTCGT TGTTGTTGGC
TGTTACTACT TTTTTGAAAG CGGTAGACTG TCGAGCCGAA TTGAAAATGT CTCACCAATT
GAAACTTATG ACATTGTGAT TTGCACCATT CTGGTCGGCC TACTCTTAGA AGCAGTACGA
AGAACCGTTG GCTATGTGCT ACTCATTGTT ATTGTTATGT TTCTACTTTA CGGCGTGTTT
GGCTATTTAT TACCAGGGCA AATGGGCTTT AGTAATATTT CGTGGACCGA GTGGAGCGAG
ATTTTTGGCA TGACAACCAG TGGCATTTTG GGGGTCACCA CAGCCACGTC TACCAACTTC
ATTTTTTACT TCATCGTCTT TGGCGTAGTG TACAGTTCCG TTGGCGGTGG ACGACTCTTT
ATAGAGTTGG CCATTAAATT GGTGGGTAAA TCCAAAGGCG GTGGTGCCAA AGTCGCCATT
ATTGGATCTA GCTTAATGGG CACCATTTCT GGTAGTGCGG TAGCAAACGT CACGGCGACT
GGTGTATTTA CCATCCCATT GATGAAAAGA ACAGGCATCA AACCAGAAAA AGCCGCAGCC
TATGAAGCCA TTGCTTCCAC TGGCGGTCAA CTTATGCCGC CCATCATGGG GATCGCCGCC
TTCGTAATGG CAGAGATGCT AGCCACCTCT TACACCAACA TCGCACTCGC GGGTATTTTC
CCAGCGCTTG CCTTTTACTT TTCACTGTTT GTTTTTGCCG GAATCCATGC CAGAAAAACC
AACACTGGCA CGCTGAACGA TGAAGATATA AACGAAATCA AATCTATCTT CCCAAGATTA
AACATGCTGT TGCCTCCTGT TGTATTGGTG GCTGGTTTGA TGATGGGCTA TTCCGCGCAA
ATCTCTGTTT TCTGGGCCAC GATAACCTGC TTTATCGCGC CATTTTTAAG CAAAAAAACC
CGCTACGACC TAAAAAACCT ACCGCAAATG GTACTGGACT CTGGTATTCA AGCGGCAAAA
ATTGCTTGCC CTATCATGGC TATAGGAATA GTTGTATCGG TCGCAATACA ATCTAACTTA
GCACTAAAAT TTGCTTCAGG ACTCATTGAT ATTGGTGGTG GTTCTTACAC GGTTTCTTTA
ATCATGATTG TGCTTGGCTG CATCATCATG GGGATGGGGC TTCCTACTGT TGCAGCGTAC
ATCATTGGCG CTGTACTCTA TGTTCCAGCA CTTAAAGAGC TAGGTGTTAG TGAGCTACAA
GCGCATTTCT TTGTGATGTA TTTTTGCGTA CTTTCAATGG TCACACCACC AGTATCACTG
GCGTCTTTTG CTGCGGCTGG CGTTGCCAAT ACAGACGCAA TGAAAACCAG TGTGGAAGCC
TTCAAAATCT GTGCAGTGGC CTTCCTCATT CCATTCGCCT TCCTTGCCGA CCCAGCGTTG
CTGTTTGTTG GAAGCTATAT AGACATTTTA TTTGCGGGTG CTGGCTTGAT CTTTTCAACC
GTCATCTGGG CAATTGGCGT CATAGGATTT GCGAAAAGAA GGATGAACCT AGTTGAACGC
ATCATCATGA TGGCATGCGG ATTCTTCGCG ATGATATCTC AAACAGCCAG CGACATGTGG
TTGATCGCCA TTGGAACCAG CATTGCTTAT TTGGTCTATC ATTGGTTAAC AAAAAATAAG
GAACCCGCAT TAGCACATTC CTTAAATCAC ACTAAATAA
|
|---|
| Protein sequence | MQKLVRRYML DPCAWLALGL IAYQYWILFN PDLPLVERAT HLVLTLAIAF LSTPFLKSNP
SSTLNKVIAV AMFALVVVVG CYYFFESGRL SSRIENVSPI ETYDIVICTI LVGLLLEAVR
RTVGYVLLIV IVMFLLYGVF GYLLPGQMGF SNISWTEWSE IFGMTTSGIL GVTTATSTNF
IFYFIVFGVV YSSVGGGRLF IELAIKLVGK SKGGGAKVAI IGSSLMGTIS GSAVANVTAT
GVFTIPLMKR TGIKPEKAAA YEAIASTGGQ LMPPIMGIAA FVMAEMLATS YTNIALAGIF
PALAFYFSLF VFAGIHARKT NTGTLNDEDI NEIKSIFPRL NMLLPPVVLV AGLMMGYSAQ
ISVFWATITC FIAPFLSKKT RYDLKNLPQM VLDSGIQAAK IACPIMAIGI VVSVAIQSNL
ALKFASGLID IGGGSYTVSL IMIVLGCIIM GMGLPTVAAY IIGAVLYVPA LKELGVSELQ
AHFFVMYFCV LSMVTPPVSL ASFAAAGVAN TDAMKTSVEA FKICAVAFLI PFAFLADPAL
LFVGSYIDIL FAGAGLIFST VIWAIGVIGF AKRRMNLVER IIMMACGFFA MISQTASDMW
LIAIGTSIAY LVYHWLTKNK EPALAHSLNH TK
|
|---|
| |