Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmwyl1_2645 |
Symbol | secD |
ID | 5367412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Marinomonas sp. MWYL1 |
Kingdom | Bacteria |
Replicon accession | NC_009654 |
Strand | - |
Start bp | 2989379 |
End bp | 2991229 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640805019 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001341493 |
Protein GI | 152996658 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00285631 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000483823 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTTAACA AGTATCCCTT GTGGAAGTAT TTGCTAATTC TTCTTGTTTT GGCTTTGGGG CTACTGTATG CCTTCCCAAA CCTTTATCCG GATGATCCAG CGCTACAACT ATCTACCCAA AAAGCGACTG CTGTTGTTGA TGAGCAGGCT TTGCAAAAAG CAAAAATTGC GCTTACAAAA GCGAATATAG ATTTAAAAGA AGCAGAGCTA ACCTCTGCTG GCGGTACCTT ACGCTTTAAT AGTGGTGAGG ACCAACTAGC TGCTAAGCCG GTTGTGGCGG CAGCACTGGG TGATGATTAT GTAACCGCGC TTAACCTTGT TCCTACGACG CCTGAATGGT TATCTGCGTT AGGAGCTGGG CCTGCTAAGC TTGGTCTTGA CTTGCGTGGT GGCGTGCACT TCTTACTAGA AGTGGATACT CCTGCAGCGT TAAAGCAAAG GCTTGAAGTT AGCGCGAGTG AAATGAAAGC TGCATTACGG AAAGATCGTG TTCGTTACCG TAGCGTTGAT ATTGAGGATG GTGTGCTTTC GGTTCGCTTT TTACAGCAGC CTGATTTGGC TACGGCAGAA ACCTTGCTGA AGAAAGATTT TTCTGAATAC CGTTATGCTA CTCGTCAAGA TGGCAGTGAT TTTTACTTAG ATGTGAGTTT TACGGAAGCA GCTAAGAAAG AAATCGAATC TTATGCATTG CAACAAAACT TAACCACATT GCGTAACCGT GTAAATGAGT TGGGTGTGGC TGAGCCATTG GTGCAGCGTC AAGGTAGTAA TCGTATTGTT GTCGAATTGC CTGGTGTTCA GGATACAGCG GCAGCGAAGC GTATTATCGG TGCAACAGCC AACCTTGAGT TTCATTTGGA AGCTGGTTTG GAGGATAAGG GTGCGGACAT TGAGACTTTA TCTTTCCGTG ATGGCAGTGG TCGTACGGCG CGTTTAGAGC GTGATCTTAT CATAACTGGT GATAGTGTTT CTGATGCGAG CTCTTCTTTT GATGAAAACG GCCGCCCGCA GGTAAATATT AATTTGGATG CCAAAGGCGG CAAGCAAATG AGTAAAGTTA CTCGTTCTGC TGTTGGTCGT AATATGGCGG TTGTGTTCAT AGAGCATAAG TCTCGCAGTC GTTTTGTTGA AAAAGACGGC AAAATGGAAG AAGTGCGTAG AAGTTATAGT GAGAAAGGCA TTATTTCTCT GGCAACCATT CAAACTACCC TAGGTAATTC ATTCCGTATC ACAGGGTTAG ATAGCCCACG TGAATCATCT GAATTGGCTT TGTTGCTTCG TGCGGGTGCT TTGGCTGCGC CAATTTACTT TGTTGAAGAG CGTACTATTG GACCAAGCTT AGGTGCTGAA AACATCAAGT TGGGTGTCAG CTCTGCGCAA ATTGGTTTAT TGGTTGTTAT GGTGTTTATG CTGCTTTATT ACAAGGTATT TGGCCTTTTT GCCAATATAT CGTTGGCGTT GAATATTGTA CTGCTAATGG CGTGTATGTC TTTACTTTCT GCCACGCTTA CCTTGCCTGG TATTGCGGGT ATTGTTTTGA CTATGGGGAT GGCGGTGGAT GCCAACGTGT TGATTTTCTC GCGAATAAAG GAGGAGTTGG CAAGTGGGGT ATCGAATCAA CAAGCGATTC ATTCTGGTTT TAACCGTGCA TTTACGACTA TTTTTGATGC CAATATCACG ACCCTGTTGG TTGCTGTGAT TTTGTTTGCG GTAGGGACTG GTCCTGTTAA AGGTTTCGCA GTGACATTGT CGCTGGGTAT TCTTACTTCT ATGTTTACGG CAATCGTTGT AACCCGTGCA CAGGTTAACC TTGTGTATGG TGGTCGTAAA AATAAGAAAC TGTACATTTA G
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Protein sequence | MLNKYPLWKY LLILLVLALG LLYAFPNLYP DDPALQLSTQ KATAVVDEQA LQKAKIALTK ANIDLKEAEL TSAGGTLRFN SGEDQLAAKP VVAAALGDDY VTALNLVPTT PEWLSALGAG PAKLGLDLRG GVHFLLEVDT PAALKQRLEV SASEMKAALR KDRVRYRSVD IEDGVLSVRF LQQPDLATAE TLLKKDFSEY RYATRQDGSD FYLDVSFTEA AKKEIESYAL QQNLTTLRNR VNELGVAEPL VQRQGSNRIV VELPGVQDTA AAKRIIGATA NLEFHLEAGL EDKGADIETL SFRDGSGRTA RLERDLIITG DSVSDASSSF DENGRPQVNI NLDAKGGKQM SKVTRSAVGR NMAVVFIEHK SRSRFVEKDG KMEEVRRSYS EKGIISLATI QTTLGNSFRI TGLDSPRESS ELALLLRAGA LAAPIYFVEE RTIGPSLGAE NIKLGVSSAQ IGLLVVMVFM LLYYKVFGLF ANISLALNIV LLMACMSLLS ATLTLPGIAG IVLTMGMAVD ANVLIFSRIK EELASGVSNQ QAIHSGFNRA FTTIFDANIT TLLVAVILFA VGTGPVKGFA VTLSLGILTS MFTAIVVTRA QVNLVYGGRK NKKLYI
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