Gene Mmwyl1_2645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmwyl1_2645 
SymbolsecD 
ID5367412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMarinomonas sp. MWYL1 
KingdomBacteria 
Replicon accessionNC_009654 
Strand
Start bp2989379 
End bp2991229 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content45% 
IMG OID640805019 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001341493 
Protein GI152996658 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00285631 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000483823 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTTAACA AGTATCCCTT GTGGAAGTAT TTGCTAATTC TTCTTGTTTT GGCTTTGGGG 
CTACTGTATG CCTTCCCAAA CCTTTATCCG GATGATCCAG CGCTACAACT ATCTACCCAA
AAAGCGACTG CTGTTGTTGA TGAGCAGGCT TTGCAAAAAG CAAAAATTGC GCTTACAAAA
GCGAATATAG ATTTAAAAGA AGCAGAGCTA ACCTCTGCTG GCGGTACCTT ACGCTTTAAT
AGTGGTGAGG ACCAACTAGC TGCTAAGCCG GTTGTGGCGG CAGCACTGGG TGATGATTAT
GTAACCGCGC TTAACCTTGT TCCTACGACG CCTGAATGGT TATCTGCGTT AGGAGCTGGG
CCTGCTAAGC TTGGTCTTGA CTTGCGTGGT GGCGTGCACT TCTTACTAGA AGTGGATACT
CCTGCAGCGT TAAAGCAAAG GCTTGAAGTT AGCGCGAGTG AAATGAAAGC TGCATTACGG
AAAGATCGTG TTCGTTACCG TAGCGTTGAT ATTGAGGATG GTGTGCTTTC GGTTCGCTTT
TTACAGCAGC CTGATTTGGC TACGGCAGAA ACCTTGCTGA AGAAAGATTT TTCTGAATAC
CGTTATGCTA CTCGTCAAGA TGGCAGTGAT TTTTACTTAG ATGTGAGTTT TACGGAAGCA
GCTAAGAAAG AAATCGAATC TTATGCATTG CAACAAAACT TAACCACATT GCGTAACCGT
GTAAATGAGT TGGGTGTGGC TGAGCCATTG GTGCAGCGTC AAGGTAGTAA TCGTATTGTT
GTCGAATTGC CTGGTGTTCA GGATACAGCG GCAGCGAAGC GTATTATCGG TGCAACAGCC
AACCTTGAGT TTCATTTGGA AGCTGGTTTG GAGGATAAGG GTGCGGACAT TGAGACTTTA
TCTTTCCGTG ATGGCAGTGG TCGTACGGCG CGTTTAGAGC GTGATCTTAT CATAACTGGT
GATAGTGTTT CTGATGCGAG CTCTTCTTTT GATGAAAACG GCCGCCCGCA GGTAAATATT
AATTTGGATG CCAAAGGCGG CAAGCAAATG AGTAAAGTTA CTCGTTCTGC TGTTGGTCGT
AATATGGCGG TTGTGTTCAT AGAGCATAAG TCTCGCAGTC GTTTTGTTGA AAAAGACGGC
AAAATGGAAG AAGTGCGTAG AAGTTATAGT GAGAAAGGCA TTATTTCTCT GGCAACCATT
CAAACTACCC TAGGTAATTC ATTCCGTATC ACAGGGTTAG ATAGCCCACG TGAATCATCT
GAATTGGCTT TGTTGCTTCG TGCGGGTGCT TTGGCTGCGC CAATTTACTT TGTTGAAGAG
CGTACTATTG GACCAAGCTT AGGTGCTGAA AACATCAAGT TGGGTGTCAG CTCTGCGCAA
ATTGGTTTAT TGGTTGTTAT GGTGTTTATG CTGCTTTATT ACAAGGTATT TGGCCTTTTT
GCCAATATAT CGTTGGCGTT GAATATTGTA CTGCTAATGG CGTGTATGTC TTTACTTTCT
GCCACGCTTA CCTTGCCTGG TATTGCGGGT ATTGTTTTGA CTATGGGGAT GGCGGTGGAT
GCCAACGTGT TGATTTTCTC GCGAATAAAG GAGGAGTTGG CAAGTGGGGT ATCGAATCAA
CAAGCGATTC ATTCTGGTTT TAACCGTGCA TTTACGACTA TTTTTGATGC CAATATCACG
ACCCTGTTGG TTGCTGTGAT TTTGTTTGCG GTAGGGACTG GTCCTGTTAA AGGTTTCGCA
GTGACATTGT CGCTGGGTAT TCTTACTTCT ATGTTTACGG CAATCGTTGT AACCCGTGCA
CAGGTTAACC TTGTGTATGG TGGTCGTAAA AATAAGAAAC TGTACATTTA G
 
Protein sequence
MLNKYPLWKY LLILLVLALG LLYAFPNLYP DDPALQLSTQ KATAVVDEQA LQKAKIALTK 
ANIDLKEAEL TSAGGTLRFN SGEDQLAAKP VVAAALGDDY VTALNLVPTT PEWLSALGAG
PAKLGLDLRG GVHFLLEVDT PAALKQRLEV SASEMKAALR KDRVRYRSVD IEDGVLSVRF
LQQPDLATAE TLLKKDFSEY RYATRQDGSD FYLDVSFTEA AKKEIESYAL QQNLTTLRNR
VNELGVAEPL VQRQGSNRIV VELPGVQDTA AAKRIIGATA NLEFHLEAGL EDKGADIETL
SFRDGSGRTA RLERDLIITG DSVSDASSSF DENGRPQVNI NLDAKGGKQM SKVTRSAVGR
NMAVVFIEHK SRSRFVEKDG KMEEVRRSYS EKGIISLATI QTTLGNSFRI TGLDSPRESS
ELALLLRAGA LAAPIYFVEE RTIGPSLGAE NIKLGVSSAQ IGLLVVMVFM LLYYKVFGLF
ANISLALNIV LLMACMSLLS ATLTLPGIAG IVLTMGMAVD ANVLIFSRIK EELASGVSNQ
QAIHSGFNRA FTTIFDANIT TLLVAVILFA VGTGPVKGFA VTLSLGILTS MFTAIVVTRA
QVNLVYGGRK NKKLYI