| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_1407 |
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| Symbol | |
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| ID | 5366082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Marinomonas sp. MWYL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009654 |
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| Strand | + |
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| Start bp | 1577825 |
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| End bp | 1580467 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640803751 |
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| Product | ribonuclease R |
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| Protein accession | YP_001340271 |
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| Protein GI | 152995436 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.243044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.755444 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGATGTT CATATTTCTA TTTTATAAAA GGGCGTCTTA TTGAAAAAAC CAAGGATAAA
AATACATTGA GTAATAAAAA AATTAACGAT CCACATCAGC AGCGAGAAGC GTCTAAGTAC
GATAACCCCG TACCAAGCCG TGAATTCATT TTAGAGTTTC TTGCTACACA AAATAAAAGC
ATGGGTCATT TAGATTTATG CGAAGCGTTT TCGCTCACTG GTGAAGACGA AATTGAAGCC
CTCCGTCGTC GTCTTATCGC TATGTGCCGA GACAACCAGA TGACCAGCAA TCAAAATGAC
GAATACTCGC CGATTTTAGA AAGTGACCTA ATTGAAGGTT ATGTTCAAGG CAATAAAGAA
GGTCATGGTT TCTTGTTGCG TCAAAGTGAT GACGATATTT TCCTATCTGC CCGTCAAATG
CAAAACGTGA TGGATGGAGA TAAAGTAAAA GTACGTCTTT CTGGTCGTAG CGTTAAAGGC
CGTTTAGATG GTGTGGTTGT TGAAGTTATA GAACGCAAGC ACAGCCAATT GGTTGGCCGC
TACTATGAAG AAAGCCGCAC GGCTTTTGTC ACACCTGAAA ATCCACGTAT CGCGCAAGAC
ATTCTGATTA CCACTGACTC TGGTTTAACA CCAAAACATG GTCAATATGT ATTAGCAGAA
ATCGTGTCTT ATGCCGAGCG CGGCAAACCA GCCCAAGGCT TGGTGAAAAA AATCCTTGGC
GACTTTATGG CGCCAGGTGT GGAAATTGAA GTGGCGATGC ATCGTTATGA AATTCCTAAC
GAGTGGCCAG CAGCGGTTGA AAAGCAAATT AAAAACTTCA GTACCGAAGT GGCGGAAGAA
GATAAAGCTC ACCGTGTTGA TTTACGCGAT ACGCCATTTG TTACTATAGA TGGTGAAGAC
GCGCGCGATT TTGATGATGC CGTATATTGT GAAAAAACGC CGGGTGGCTG GAAGTTATTT
GTTGCCATTG CTGATGTCTC TCATTATGTG AAAAAAGACA CAGCGTTAGA TGAAGAAGCT
ATCGTACGTG GTAACTCTGT CTATTTCCCT GGTCGCGTTA TTCCTATGTT GCCGGAAGTA
TTGTCGAACG GCTTGTGTTC ACTTAATCCA GACGTAGATC GTTTGGCGAT GGTAGCCGAA
GTATCCTTGA CTACGAAAGG CAAGATGCGC GGCTTCAAGT TTTATGAAGG CATTATTCGT
TCTCATGCTC GTTTAACCTA CAGCAAAGTC GCTAAGATGA TCGATGACGA GCCAGAAGAG
CAAGGTATTG AGCTGCGTGA GCGTTATGCG TCTATTGTGT CGCATATTGA CGACTTAAAA
GGTTTGTATC ATGTATTAAA AGGCGCTCGT GATGAACGTG GTGCGATGGA GTTTGATACG
ATCGAAACCC GCATGGTATT CGACGAGAAT TCTAAGATTG AACACATAAT TCCGGTTGAA
CGTAATGACG CTCATAAACT GATTGAAGAA TGTATGTTGT GTGCCAACGT GGCGGCGGCT
GAATTGTTGA TTAGTGCAGA TTTACCTGCA TTGTATCGTG TCCATGAAGG ACCAAAAGAC
GATCGCTTGT TAACCTTACG TACTTACCTT GGTTTGCTGG GTTTAGAATT AACGGGCGGC
ACTAAGCCGA CGCCAGCAGA TTACGCGGCA CTGTCTGAAA GCATTAAAGA GCGTGCAGAC
GCTCGTAGTA TTCAAACAAT GATGCTGCGT TCTATGTCGC AGGCAGTATA TCAAGCGGAT
AACTTGGGCC ACTTTGGTTT GAATTATGAA GCTTATACTC ACTTTACGTC GCCAATTCGT
CGTTACCCAG ATTTGTTGGT TCATCGCGCG ATTCGTTATT TGATTCGTGG TGAAGGCCGC
CCAACTGTGC GTCAGGCGCA TCGTGTGGCA GGCAGCCCAG AACTAAAAGA ACGTAAAATC
TACGGTTACA CCCATGCGGA TATGGATGGT TTAGGGGATT CTTGTTCTTT GACTGAACGC
CGCGCTGACG AAGCGACTCG TGATGTAGAA GCGTGGTTGA AATGCCAGTA TGTTGAACAG
CACTTGGGCG AACCGTTTGA CGGTGTTGTT ACTGCAGTGA CTTCATTTGG TTTGTTTGTT
GAGCTGCAAG GTTTGTTTGT TGATGGTTTG GTGCATATTT CAGGGCTTGG GCAAGATTAT
TTTGTTCATG ACATGGAGCA TCAGGCAATT ATTGGTGAGC GAACTGGTCG AGTATTCCGC
CTTGGCGATA CGTTGAAAGT TCGAGTGTCT AATGTGAACT TGGAGCAACG CAAGATTGAT
TTGAGTTTGG ATGAAAGTGC TGCGCGTCAA CCACGTAAGA AAGTGGAGCG CAATGACATG
TCTGAACTTG AAATGCAATT AGCTCAGTTG CCGCCAATTG AATTGGGTGG TCGTCCTAAG
CCGAAGTCTG CTGAAAAAAT AGAAGGTGAC AAGTCGAAAG ACGCTAAGTC ATCGAAAGAT
GGTAAAGAGT CGGATGGTAA GGCGAAGAAA AAACGTCGTT CGCCTGCGTC TAAGGGTAAA
CGTATCAGAC AGAAAAAGTC GGGTACTGTT TCGGCAAATG GTAAGCCAAC GGCAGCGGCT
AAAAAACCGA AAAAGCCTAA GAAGCCCAAA AAGAGCAATG CTAAACCAAA AGCAAAAGAC
TGA
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| Protein sequence | MRCSYFYFIK GRLIEKTKDK NTLSNKKIND PHQQREASKY DNPVPSREFI LEFLATQNKS
MGHLDLCEAF SLTGEDEIEA LRRRLIAMCR DNQMTSNQND EYSPILESDL IEGYVQGNKE
GHGFLLRQSD DDIFLSARQM QNVMDGDKVK VRLSGRSVKG RLDGVVVEVI ERKHSQLVGR
YYEESRTAFV TPENPRIAQD ILITTDSGLT PKHGQYVLAE IVSYAERGKP AQGLVKKILG
DFMAPGVEIE VAMHRYEIPN EWPAAVEKQI KNFSTEVAEE DKAHRVDLRD TPFVTIDGED
ARDFDDAVYC EKTPGGWKLF VAIADVSHYV KKDTALDEEA IVRGNSVYFP GRVIPMLPEV
LSNGLCSLNP DVDRLAMVAE VSLTTKGKMR GFKFYEGIIR SHARLTYSKV AKMIDDEPEE
QGIELRERYA SIVSHIDDLK GLYHVLKGAR DERGAMEFDT IETRMVFDEN SKIEHIIPVE
RNDAHKLIEE CMLCANVAAA ELLISADLPA LYRVHEGPKD DRLLTLRTYL GLLGLELTGG
TKPTPADYAA LSESIKERAD ARSIQTMMLR SMSQAVYQAD NLGHFGLNYE AYTHFTSPIR
RYPDLLVHRA IRYLIRGEGR PTVRQAHRVA GSPELKERKI YGYTHADMDG LGDSCSLTER
RADEATRDVE AWLKCQYVEQ HLGEPFDGVV TAVTSFGLFV ELQGLFVDGL VHISGLGQDY
FVHDMEHQAI IGERTGRVFR LGDTLKVRVS NVNLEQRKID LSLDESAARQ PRKKVERNDM
SELEMQLAQL PPIELGGRPK PKSAEKIEGD KSKDAKSSKD GKESDGKAKK KRRSPASKGK
RIRQKKSGTV SANGKPTAAA KKPKKPKKPK KSNAKPKAKD
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