| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_1308 |
|---|
| Symbol | |
|---|
| ID | 5367430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | + |
|---|
| Start bp | 1461377 |
|---|
| End bp | 1462393 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640803647 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001340172 |
|---|
| Protein GI | 152995337 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTG CAAATATGGA TAAAGAAGCA GCTAAGGTTT CGAATATTGG AGATTTTGAT
CTTGATACAC TAGACGATGA GCTCATTGGA GATGTGCTTG TTGACGAGGA GCTGGTTGAT
GAAGAGTTTG AGTCGGCTGT AAGTGCTCGT TATGCCGACG CTGACTCTAG TCGTAACCTT
GATGTTACTC AGTTGTATTT AAGTGAGATT GGTTTTTCTC CATTGCTTAC TGCCGAGGAA
GAAGTATATT TTTCTCGCCT TTCTCTAAAA GGCGATCAAA AAGCGCGTAC GCGCATGATA
GAAAGTAATT TGCGTTTGGT TGTTAAGATA TCTCGACGTT ACCTTAACCG AGGTTTATCT
CTTTTGGACT TAATCGAGGA AGGTAATCTT GGTTTGATTA GGGCTGTGGA GAAGTTTGAT
CCAGAGCGTG GATTTCGGTT TTCGACTTAC GCTACTTGGT GGATACGGCA AACCATTGAG
CGTGCGATCA TGAATCAGAC AAGAACCATT CGCTTGCCGA TTCATGTGGT AAAAGAGCTT
AATGTATATT TGCGCGCAGC TCGCGAGCTG ACACAAAAGT TAGATCATGA GCCTAGTGCT
GAAGAAATTG CAGAAATGCT GGATTGTCCT GTAGAAGATG TACAAAAGAT GCTTGGCCTG
AATGAAAAGG TTAGCTCAAT TGATGCAACA TTCGGAGGGG ACAATAATGA TAAGAGTTTG
GTCGAAATTT TAGCGGATAC TCTTCATCAA GGGCCAGAAG CAGATCGTCA AGATGGCGAT
GTTTTAAACA GTATCGAACT TTGGCTTGAT GAGTTGAGTG AAAAGCAGTG TGAGGTCATT
ACTCGTCGTT TTGGTTTGCG AGGACATGAA GCCAGCACAT TAGAGCATGT TGGCGCTGAA
ATTGGTTTAA CGCGTGAGCG TGTTCGTCAG ATTCAAGTCG AGGCATTACG AAAACTACGT
TTAATTATGG ATAAAGAGGG TTTGTCATTA GACGATGTGA TTCGGTTTGA TGATTAA
|
|---|
| Protein sequence | MKFANMDKEA AKVSNIGDFD LDTLDDELIG DVLVDEELVD EEFESAVSAR YADADSSRNL
DVTQLYLSEI GFSPLLTAEE EVYFSRLSLK GDQKARTRMI ESNLRLVVKI SRRYLNRGLS
LLDLIEEGNL GLIRAVEKFD PERGFRFSTY ATWWIRQTIE RAIMNQTRTI RLPIHVVKEL
NVYLRAAREL TQKLDHEPSA EEIAEMLDCP VEDVQKMLGL NEKVSSIDAT FGGDNNDKSL
VEILADTLHQ GPEADRQDGD VLNSIELWLD ELSEKQCEVI TRRFGLRGHE ASTLEHVGAE
IGLTRERVRQ IQVEALRKLR LIMDKEGLSL DDVIRFDD
|
|---|
| |