| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_0505 |
|---|
| Symbol | |
|---|
| ID | 5368162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 571029 |
|---|
| End bp | 572792 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640802841 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_001339376 |
|---|
| Protein GI | 152994541 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACT CTCATCGCAT TTCTTTAGCA GACTTAGCTA AAAGCAATCA AAAAATCCTA
CTCAAAGGCA GCTCCCGTGA ACTAGATGGC CAACATGCAC CCACCGTAGA GGAGCTGACA
GAATGCCTGT TTTTTTCGCC CGGTGATGGT CGCATTTGGT TAGACGATCA ACGCATGTTA
CTAATCCACA GCTCGTCGTT TGGTCTATTG CGTCGCGAGA TGATTGATTC CCTTGGCCTC
GACAAATCGC GCGATATTCT TACTCGAACA GGTTATTTAT CTGGCCTAAG AGACGCAGAG
CTCATTCAAA AGCGCTGGCC AGACTCAGAT CCAGCCTCCA TTTTCACTGC TGGCACTCAT
CTTCATGGAC TAGAGGGCGT CGTCAAAGTG GAAACTATTC ATTTTGAATT TGATACCGAA
AAAGGCCTCT ATGACGGTGA ATTTTTGTGG CATCACAGCA GTGAAGATGA AGAACACATT
GCCGCTTACG GCATTGGTAG CTCACCCGCA TGCTGGATGG AATTAGGTTA CGCCATCGGT
TATGTCTCTG GCTTAGTAGG ATCTCTGGTC ATTTTCAGAG AAATAGAATG TCAATCTATG
GGGCATTCGG TCTGTCGGGT CATCGGTAAA TCTGCCGAAC TTTGGGATAA TATCGAAGAC
GATATTCGCT TCCTTAACGT CACTTCTCAA AATGCTGAAC TGGTTACTAA ACCTTCCCCT
AAACTCGACC TAATGGAACC AGAACTGTTA GACGATCAGC CAAAAATGAT TGGAGTTTCC
GCCGCTTTTA CCGCTGCTAA TCATTCATTA CAAAAGGTCG CACCAACCAA TGCTACAGTG
CTATTCACTG GCGAATCTGG AGTAGGCAAG GAGCTTTTTG CCAGTATGCT ACATAAATTC
AGTCGCCAAA CTGGTCCTTT TGTCGCATTT AACTGTGCTG CGATTCCTGA AAATCTCATA
GAAACTGAAC TGTTTGGCGT CGAAAAAGGC GCCTATACAG GAGCAACGAG TAGCCGTCCC
GGTCGCTTTG AAAGAGCCAA TGGCGGTACA CTATTCTTAG ATGAAATTGG CACACTAAGC
CTAGCAGGAC AGAGTAAATT ATTACGTGTT TTACAAGAAA AAGAAGTAGA ACGAGTCGGC
GGTATTTCAG CTATTAAAAT CAATGTAAGA GTCGTCGCTG CAACCAATGT AGACCTACGT
AAAGCCATTG AAAAAGGCGA ATTCCGCGAA GATTTGTTCT TTCGTTTAAA CGTCTTCCCA
ATACATCTAC CTCCGCTAAG GGAGCGAAAA GCTGACATCC CATTGCTCAT TAATCACTTC
TACCATCACT TTTGCCAACT GCATCAAAAA GCGCCATCTG GCATGACACA AACAGCGCGA
CGAGCGTTAT TAAATTATGG TTTTCCGGGG AATATTCGCG AGTTACAAAA TCTAATGGAG
CGCGGCGTGA TTGCATCAGA AGAAGGTGAA CCGATTGATC TTCCACATTT GTTTAGAAAC
GAGTTTATTC CAGAAGAAAT TATCTACTCA GTGAATCACC AAGGCACCTT AAGCCATGCC
GATAGCAAAA AAGAAGCGAC AGAATCGCTC TTGGAACACA TCACTCAATT TGTCGGTGGA
AAAGATCATC TTGATATTGA AGAGCTTGAG CAAAGCTTAT TACGAGAAGC CGTAGAAAAC
GCCCAAGGCA ATTTATCTGA AGCGGCAAGA CGAGTTGGTC TAAGCAGACC ACAATTGGCT
TATCGTCTAA AGAAGAATAA GTAA
|
|---|
| Protein sequence | MTNSHRISLA DLAKSNQKIL LKGSSRELDG QHAPTVEELT ECLFFSPGDG RIWLDDQRML
LIHSSSFGLL RREMIDSLGL DKSRDILTRT GYLSGLRDAE LIQKRWPDSD PASIFTAGTH
LHGLEGVVKV ETIHFEFDTE KGLYDGEFLW HHSSEDEEHI AAYGIGSSPA CWMELGYAIG
YVSGLVGSLV IFREIECQSM GHSVCRVIGK SAELWDNIED DIRFLNVTSQ NAELVTKPSP
KLDLMEPELL DDQPKMIGVS AAFTAANHSL QKVAPTNATV LFTGESGVGK ELFASMLHKF
SRQTGPFVAF NCAAIPENLI ETELFGVEKG AYTGATSSRP GRFERANGGT LFLDEIGTLS
LAGQSKLLRV LQEKEVERVG GISAIKINVR VVAATNVDLR KAIEKGEFRE DLFFRLNVFP
IHLPPLRERK ADIPLLINHF YHHFCQLHQK APSGMTQTAR RALLNYGFPG NIRELQNLME
RGVIASEEGE PIDLPHLFRN EFIPEEIIYS VNHQGTLSHA DSKKEATESL LEHITQFVGG
KDHLDIEELE QSLLREAVEN AQGNLSEAAR RVGLSRPQLA YRLKKNK
|
|---|
| |