| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_0021 |
|---|
| Symbol | |
|---|
| ID | 5366177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 24000 |
|---|
| End bp | 25592 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640802364 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_001338899 |
|---|
| Protein GI | 152994064 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.193993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.266827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAA CAGAACAAGA ATGGTGGCGT GGCAGTGTTA CCTATCAAAT TTATCCGCGC
TCTTTTATGG ATAGTAATGG TGACGGTATA GGCGATATCC CTGGCATCAC AAGCCGTTTA
GATTATTTGG CTGATTTAGG TGTTGACGCT ATTTGGCTGT CTCCCATATT CACGTCACCA
ATGAAAGATA TGGGTTATGA TGTTTCAAAT TATATAGACA TAGATCCGTC TTTCGGAACA
CTCTCCGATT TTGATGAGAT GATAGCCAAG GCTCATAATT TGGGTCTTAA AGTCATCATT
GATCAAGTGC TCTCACACAC CAGTGATCAA CACCCATATT TCTTAGAAAG CCGACAAAAT
CAAACCAATG ATAAGGCCGA CTGGTACATA TGGGCAGATG CAAAACCTGA CGGTTCACCA
CCAAACAATT GGTTATCGAT TTTTGGAGGG ACTGGCTGGC AGTGGGATTC TCGTCGTAAA
CAGTATTATA TGCATAATTT TTTACGCCAA CAGCCTGATT TAAATTTCCA TAATCCAAAT
GTTCAAGAAT GGATTCTCAG TACTGTACGA TTTTGGCTAG AACGCGGAGT GGATGGTTTT
CGTCTAGATA CTGTGAACTA CTATTTTCAT GATAAATTGC TACGGGATGA TGCCGCTGAT
TTTCGTCAAA AATCTGTAGC GGATTGGAAT CCTTACCACA TGCAGTATCA TTTATTTTCA
AAAAACCAAC CAGAGAATTT GGTATTCCTT AAAAAGTTTA GAGCTTTACT AGATGAATAT
GGAGCCACGA CATCGGTTGG GGAAGTAGGT GAGAGCCACC ACCCAATAGA AATGATGGGG
GAGTATACGA CAGATAAACG ATTGCATATG GCATACTCAT TTGAAATGTT AGGTCATTCG
TTTTCACCCA AACATTTTTC CAAACAAATA ACCGATTTCT TTCGACTAGC ACCAAAAGGA
TGGCCTTGCT GGGCCTTTTC CAATCATGAT GTTGTTCGGC ATGTTAGCCG CTGGAAAAAA
CACGCTGAAG ATCCAACCGC TTTAGCTAAA CAAGCTTGTG CTTTATTACT AAGTTTAGAA
GGCTCTGTCT GTTTGTATCA GGGTGAAGAA CTGGGTCAAC AAGAGACAGA TCTAAACTAT
GACGAACTTG TCGACCCGCA AGGAATTGAG TTTTGGCCTG AAGACAAAGG GAGAGATGGC
TGCCGAACTC CAATGAGCTG GGATAACTCA GAGTTTTCTG GTTTTTCATC TTCAACTCCA
TGGCTTCCAG TTAAAGAAAC TCAACGCCAA TTAAATGTTG CTGACCAGCA GAATGATCCA
TCGTCTGTAC TCAATTTTTA TCGCGAGATG CTTGCGTTTC GCAAACAAAA TTCCGTCCTA
CGAAATGGTA ACACTCTCTT CATCAACGAT GATAATTCAC TTTTAGCATT CGTTCGAGGT
GACACAATGC TATGTATCTT TAACTTAGGT AATCAGTCGA TTACTTATCA AAATACCACT
GAGTTTAATC AATGTATTAA AGTTGGTAAC ACTAAGGTTG AAGGGAAAGC GCTAGTATTG
GGGACAAATG GTTTTGCCTT TTTAACGAAG TAA
|
|---|
| Protein sequence | MNLTEQEWWR GSVTYQIYPR SFMDSNGDGI GDIPGITSRL DYLADLGVDA IWLSPIFTSP
MKDMGYDVSN YIDIDPSFGT LSDFDEMIAK AHNLGLKVII DQVLSHTSDQ HPYFLESRQN
QTNDKADWYI WADAKPDGSP PNNWLSIFGG TGWQWDSRRK QYYMHNFLRQ QPDLNFHNPN
VQEWILSTVR FWLERGVDGF RLDTVNYYFH DKLLRDDAAD FRQKSVADWN PYHMQYHLFS
KNQPENLVFL KKFRALLDEY GATTSVGEVG ESHHPIEMMG EYTTDKRLHM AYSFEMLGHS
FSPKHFSKQI TDFFRLAPKG WPCWAFSNHD VVRHVSRWKK HAEDPTALAK QACALLLSLE
GSVCLYQGEE LGQQETDLNY DELVDPQGIE FWPEDKGRDG CRTPMSWDNS EFSGFSSSTP
WLPVKETQRQ LNVADQQNDP SSVLNFYREM LAFRKQNSVL RNGNTLFIND DNSLLAFVRG
DTMLCIFNLG NQSITYQNTT EFNQCIKVGN TKVEGKALVL GTNGFAFLTK
|
|---|
| |