| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC7_1040 |
|---|
| Symbol | |
|---|
| ID | 5329092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C7 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009637 |
|---|
| Strand | + |
|---|
| Start bp | 1016171 |
|---|
| End bp | 1017238 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640793585 |
|---|
| Product | isopentenyl pyrophosphate isomerase |
|---|
| Protein accession | YP_001330257 |
|---|
| Protein GI | 150402963 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.20206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATAATA ATAGCATTGA ATATAGAAAG TTGGAACACC TTATTGTATG CGACCACTGT
GATGTGGAGT ATAAAAAAGG AACCCTTCTT GAGGACGTTG AATTAATTCA CAGCGGTATA
TCAAACTGCG ATTTAGACGA TATCGATACA TCTATCGAAA TTTTTGGAAA AAAATTAAAT
GCTCCGTTAA TTGTGGCAGC AATAACTGGT GGACATCCCA AAGCAAAGGA AGTCAATAAA
AATATTGCTA TTGCTGTCGA GGAACTAAAT TTGGGTATGG GTGTAGGCTC ACAACGGGCA
GCTATATCAA AAAGCTACCT TGAAGACACC TATTCTGTTG TGCGGGATCA CACTTCCTCA
TTAATAATAG GAAATCTCGG GGCAGTTAAC TTTGTGGAAG ATTCATGGGA CGAAGAAATT
ATTTCAAAGT CTGTAGAAAT GATTGATGCA GATGCAATGG CAATTCATTT CAATCCACTA
CAAGAAGCAA TACAGCCAGA AGGCGATGTA AACTTCAAAG GACTTAATAT TTTAAAAGAA
ATAATTTCAA AGTACAATAA AATACATGGA AAAATCCCAT TTATCGCAAA ACAGGTTGGC
GAAGGATTTT CAAAAAAAGA CGCCATTTTT TTAAAAGAAA TAGGCTTTGA TGCGATAGAT
ATTGGCGGAA GTGGCGGAAC TTCATGGGCT GCTGTAGAGC TTTACAGGAT AAAAGATGAA
GAGCAGAAGA ATTTTTCAAA CCAGTATTTT AACTGGGGAA TTCCAACTGC AGCATCAATT
CTGGAAGTAA ACTCAGTCTT TTCAGGACCC ATAATTGCAA CAGGCGGAAT AAGGACTGGA
ATCGATATCG CAAAATCAAT TACAATCGGT GCAAACTGCT GTGGAACTGC TTTGCCAATT
TTAAAAGCAG CCTTAAAGTC TTCAGAAGCT GTTACAGCTG TGCTTGAAAG AATGATTAAA
GAATTAAAGA CTACAATGTT TTTAACAGGT AGTAGTAATC TAAACGAACT AAAATCTGCC
AGATATGTTT TAAAAGGCGA TTTAAAGAAT TGGAAGGATC AGATTTAA
|
|---|
| Protein sequence | MNNNSIEYRK LEHLIVCDHC DVEYKKGTLL EDVELIHSGI SNCDLDDIDT SIEIFGKKLN
APLIVAAITG GHPKAKEVNK NIAIAVEELN LGMGVGSQRA AISKSYLEDT YSVVRDHTSS
LIIGNLGAVN FVEDSWDEEI ISKSVEMIDA DAMAIHFNPL QEAIQPEGDV NFKGLNILKE
IISKYNKIHG KIPFIAKQVG EGFSKKDAIF LKEIGFDAID IGGSGGTSWA AVELYRIKDE
EQKNFSNQYF NWGIPTAASI LEVNSVFSGP IIATGGIRTG IDIAKSITIG ANCCGTALPI
LKAALKSSEA VTAVLERMIK ELKTTMFLTG SSNLNELKSA RYVLKGDLKN WKDQI
|
|---|
| |