| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC7_0961 |
|---|
| Symbol | |
|---|
| ID | 5329187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C7 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009637 |
|---|
| Strand | + |
|---|
| Start bp | 922496 |
|---|
| End bp | 923497 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640793497 |
|---|
| Product | H/ACA RNA-protein complex component Cbf5p |
|---|
| Protein accession | YP_001330179 |
|---|
| Protein GI | 150402885 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAATTAA TTGTAAAAGA AGAATCAAAA ACGGATTATA ATTACGGATC TGATCCATAC
AAAAGAGACA TAAAAACGCT TCTAAATACG GGACTTGTTG TAATCGATAA GCCATCTGGC
CCAACTTCCC ACGAAGTTGC CGCATGGGTT AGAAACATGC TAAATTTAGT TAAAGCAGGG
CATGGTGGAA CGCTTGACCC AAAAGTTACA GGTGCACTTC CTGTAGCATT AGGAAACACC
ACAAAGTGTG TTCCGATCTG GCACATCCCT CCAAAAGAAT ACGTGTGTTT GATGCATCTG
CATGACGATG CTAAACTTGA AGATATTGAA AATATTTTCA AAGAATTTAC TGGAAGAATT
CATCAAAGAC CCCCTTTAAA AGCTGCTGTC AAAAGAAGCC TTAGAATTAG AAAAATATAC
GAAATTGAGA TTTTGGAAAT CGATGGTCGA GATATATTAT TTAGAACAAA ATGCCAGTCC
GGAACGTATT TAAGAAAACT TGTAGATGAT ATGGGAGAAG CTCTTGGAAC ATCTGCACAC
ATGCAGGAAC TTAGAAGAAC GATTAGTGGG CCATTTTATG AAAATGAAGC CGTTTATTTG
CAGGATTTAC TCGATGCATA TATATTCTGG AAAGAAGACG GAAACGAAGA AGAATTAAGA
AAATTAGTAA AACCTCTTGA ATACGGGCTA CAACACCTTA AAAAAATAAT TGTAAAGGAT
AGCGCAGTCG ATGCAGTATG CCATGGAGCT ACACTTTATT CTTCAGGAGT TTCAAAAATT
GAAAAGGGAA TTGGAACTGA TGAAGTTGTT CTGATCGAAA CACTAAAAGG AGAAGCCGTT
GCAGTTGGAA AACCACTCAT GAATACAAAA GACATGCTAA AAACCGAAGA AGGCGAAGTT
GTAGAAATAA CGCGTGTGAT AATGGAACCT GGGATCTATC CTAGAATCTG GAAAAAAAGA
AATAAAAATG ATAAAACTAA AGCGGAATCA AAGAAGAAAT AA
|
|---|
| Protein sequence | MELIVKEESK TDYNYGSDPY KRDIKTLLNT GLVVIDKPSG PTSHEVAAWV RNMLNLVKAG
HGGTLDPKVT GALPVALGNT TKCVPIWHIP PKEYVCLMHL HDDAKLEDIE NIFKEFTGRI
HQRPPLKAAV KRSLRIRKIY EIEILEIDGR DILFRTKCQS GTYLRKLVDD MGEALGTSAH
MQELRRTISG PFYENEAVYL QDLLDAYIFW KEDGNEEELR KLVKPLEYGL QHLKKIIVKD
SAVDAVCHGA TLYSSGVSKI EKGIGTDEVV LIETLKGEAV AVGKPLMNTK DMLKTEEGEV
VEITRVIMEP GIYPRIWKKR NKNDKTKAES KKK
|
|---|
| |