| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC7_0771 |
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| Symbol | secD |
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| ID | 5328163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C7 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009637 |
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| Strand | - |
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| Start bp | 753292 |
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| End bp | 754458 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640793298 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001329989 |
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| Protein GI | 150402695 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTGC TAAAAGACCC TAAAGTAATA ATTCTTTTAG TATGTATTTT GGCCTCCTTG
CTACTTATTG CATTTAAGGG GATTTCCTTT GGTGTAGATT TAAGTGGTGG TTCTACAATA
GTTTTACAGA CTGAAACTGA GCTTTCAGAA TCTGAAATGA CAACTGTAAA TGAAATATTA
ACAAGTAGGC TTAATACAAA TGGACTTAGT GACGTTAGAA TTTACCCTAG GGGAAGTGAC
GAGGTAGTTA TTGAAATACC CGAAAGTGCG GATTTAGACA GAATAAAAAA GATTTTAACG
CAACAAGGGG TATTTACTGC AATAATTGAT AACCAGACTG CATACACAGG GCAAGATATA
TCTTATGTTG AAGAACCTGG AACAACTGCT TCAGGTTACG GGGTAGGATT TAAATTAACT
CTTGACGGGG CACAAAACTT TGCAGATGTT GCTTACGGAA AAGGAGGATA TCCTGTAGAA
CTCTACATGG ATGATAATTT AATAAGTTCC CCGATTCTTT CAGCAGACCT TGCAGATGGA
AATATACACC AAAGTCAAGT AATAACTGTT GCAGGATCAA ATCCAACTGA AGATGATATC
GATGAAGCTT GGGTTATTTA CACAGCTTTA CAATCAGGTT CACTTCCTGT AAAAGTACAG
ATTGAATACA TCAGTTCGGT ATCCCCTACT TTGGGATCAG AATTTATAAA AGGATCAGTA
ATTGCAGGAT TGTTTGCATT CATTGCAGTT GCAGCAGTTA TTTCATTTAG ATATAAAAAT
CCAAAGATAG TTCTTCCAAT CCTTATAACT GGATTTTCAG AAGTGCTTTT AATCTTGGGT
TTTGCATCAC TCATCAGCTG GAAACTTGAC CTTGCATCAA TTGCAGGAAT TATTGCAGCA
GTGGGAACGG GTGTTGATCA CCAAATAGTT ATCACCGATG AAACAATTGC TGGTGAAGCT
AAAAAAGTAA CCAAAAGTAT TAAAAGGGCG TTCTTCATTA TATTCGGTGC AGCGGCTACA
ACAATTGCGG CAATGCTTCC ATTGTTTGTG ATGGGTATTG GAATGCTCAA AGGATTTGCA
ATAACCACTA TCGCAGGTGT TTTAATGGGA ATTTCAATTT CAAGACCTGC ATTTTCGAGA
ATAATACAAT ACGTATTAAA GAATTAA
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| Protein sequence | MKLLKDPKVI ILLVCILASL LLIAFKGISF GVDLSGGSTI VLQTETELSE SEMTTVNEIL
TSRLNTNGLS DVRIYPRGSD EVVIEIPESA DLDRIKKILT QQGVFTAIID NQTAYTGQDI
SYVEEPGTTA SGYGVGFKLT LDGAQNFADV AYGKGGYPVE LYMDDNLISS PILSADLADG
NIHQSQVITV AGSNPTEDDI DEAWVIYTAL QSGSLPVKVQ IEYISSVSPT LGSEFIKGSV
IAGLFAFIAV AAVISFRYKN PKIVLPILIT GFSEVLLILG FASLISWKLD LASIAGIIAA
VGTGVDHQIV ITDETIAGEA KKVTKSIKRA FFIIFGAAAT TIAAMLPLFV MGIGMLKGFA
ITTIAGVLMG ISISRPAFSR IIQYVLKN
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