Gene MmarC7_0564 details

Gene Information

• Locus tag: MmarC7_0564
• Symbol: rps13p
• ID: 5328604
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C7
• Kingdom: Archaea
• Replicon accession: NC_009637
• Strand: +
• Start bp: 574324
• End bp: 574773
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640793089
• Product: 30S ribosomal protein S13P
• Protein accession: YP_001329783
• Protein GI: 150402489
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0099] Ribosomal protein S13
• TIGRFAM ID: [TIGR03629] archaeal ribosomal protein S13P

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGACTCAGA CAGAATTCAA ACACAGAATT AGAATCTCAA AAACAGACCT TGAAGGTAAA 
AACCCACTTG AATACGCACT ACAAGAAATG AAAGGTATTG GTAGAGCGAT GGCTAGAGCA 
GTAATTAGAG TTACTGAATT AGACCCTAAA CAACAAGCTG GTTACTTAGC TGACGAAGAT 
GTTTTAAAAA TAGAATCAGT ATTGGAAGAC CCTGCAACAC ATGGAATCCC TTCATGGATG 
TTCAACAGGA AAAAAGATGT TTACTCAGGA CTCGATAAAC ACCTTATCGA AACAGATCTC 
GTACTCACAG TACAAGAAGA CATCACAAAC ATGAAAAAGA TAAGATGCTA CAGAGGAGTC 
AGACACGAGT TAAGATTACC TTGTAGAGGA CAGAGAACCA GAGGTTCATT CAGAAAAGGA 
ACTTCAATGG GAGTTAAAAG GAAAAAATAA 

 

Protein sequence

MTQTEFKHRI RISKTDLEGK NPLEYALQEM KGIGRAMARA VIRVTELDPK QQAGYLADED 
VLKIESVLED PATHGIPSWM FNRKKDVYSG LDKHLIETDL VLTVQEDITN MKKIRCYRGV 
RHELRLPCRG QRTRGSFRKG TSMGVKRKK