Gene Smed_3568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3568 
Symbol 
ID5324456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3775013 
End bp3775918 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content64% 
IMG OID640792517 
ProductFAD-dependent pyridine nucleotide-disulphide oxidoreductase 
Protein accessionYP_001329218 
Protein GI150398751 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0492] Thioredoxin reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00847142 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGGTTG ATGCGGCGCC AGTTGATGTA ACGATTGTGG GAGGAAGCTA TGCGGGTCTT 
TCCGCGGCAT TGCAGCTGGC AAGGGCGAGG CGCTCCGTGG TGGTCGTCGA TTCGGGCGCG
CGCAGGAACC GCTTCGCCGA CACGTCGCAT GGGTTCCTCA GCCGCGACGG CGAAGCGCCG
GCGGTGATCG CGGCGCACGG GCGGGAGCAG TTGATGGCCT ATCCCAATGT GCGATTCGTC
GAAGGAATGG CTGACACGGT AAGCCGCGGC GGCGCGAATC TCATCGTCTC GATACAGGGT
GAAAAGATCG CCGCGCGGCG GTTGATCCTG GCCACCGGGG TGATCGATGA ATTGCCGTCG
CTGCCGGGAC TTCAGGAACG ATGGGGCCGT GCCGTCTTTC ATTGCCCCTA TTGCCACGGC
TACGAGCTCG GGCAGGGGCG AATCGGCGTT CTCGCGACCG GTGAGAACAG TTTTCACCAG
GCTATGATGC TGCCGGACTG GGGACCGACC ACCTTGTTTG CCAATGATGT ATTCGAGCCC
GATGCCGCCC AGGCCGCCAT GCTCGAGGCA CGCGGCGTGG AGATCGAAAG GCAGAAGGTC
GTCGCTCTCG ACGGGCCGAA GGCGACCTTG GTGCTGGAAG GCGGTCGGAC TGTTTCCCTC
GAAGGTCTTT TCGTTGCGTC CCGTACCCGC ATGGCAAGCG GCCTGCCCGC AGCGCTCGGA
TGCGCTTTCG AGGAAGGCCC GCTCGGGCCT TTTATACGGA CGAATGAGGC AAAGGAGACG
AGCGTGGAGG GCGTCTACGC CTGCGGCGAT GCGGCGCGCT CGGCGGGCTC GGTCTCCCAT
GCGGTGGGCG ACGGCGTCAC GGCAGCCGTG GCTGCCCATA AATCGTTGAT TTTCGACGTG
CATTGA
 
Protein sequence
MSVDAAPVDV TIVGGSYAGL SAALQLARAR RSVVVVDSGA RRNRFADTSH GFLSRDGEAP 
AVIAAHGREQ LMAYPNVRFV EGMADTVSRG GANLIVSIQG EKIAARRLIL ATGVIDELPS
LPGLQERWGR AVFHCPYCHG YELGQGRIGV LATGENSFHQ AMMLPDWGPT TLFANDVFEP
DAAQAAMLEA RGVEIERQKV VALDGPKATL VLEGGRTVSL EGLFVASRTR MASGLPAALG
CAFEEGPLGP FIRTNEAKET SVEGVYACGD AARSAGSVSH AVGDGVTAAV AAHKSLIFDV
H