Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3557 |
Symbol | |
ID | 5324445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 3762428 |
End bp | 3763237 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640792506 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001329207 |
Protein GI | 150398740 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAAAAG GGCATTTCAG GGTACTTCCG CGTCGCATTG CGGGCATCGA TGTGGTCGAG GCAACGACGA ACCACAGTTT CGCCCGCCAT ACGCACGAAC AATTCGGCAT CGGCCTGGTC CATGCCGGTG CGCAAACGTC GCTGAGCGGC CGCGGAACCG TCGCGGCGGA AGCCGGCGAC GTGATCACAG TCAATCCCGG CGAGGTCCAT GACGGAGCGC CGATTGGCGA TCTCGGACGA TCCTGGCGAA TGCTCTACCT CGATCCGCCG CTTGTGGCCG CGCTCGTCAA TGACGTCACC GAAGGGAAAA GATCGAGTTG CGAATTCTCG GACCCGGTGA TCAGAAGCCC CACCCTTGCA GGCCGCTTTC GGGCGATCTT CGCTGCTGCC ATAGCGGTCG ACAGCCCCGG GTCGACGCTT TGCTGGGATG AACTCGCCGT CACTCTGTTC GCGGAGGCGA TGCAGCTTGC CCCGGCACGT GCTCCGGCCA GCGTGTCCAG GTCGGTCGCC AGGGCCGTAA ACCTGATCGA CCACGATCCG CTTGCGTCCG TGACGCTCGA GGACCTTGCC CGCGAGAGCG GATTGAGCCG CTTCCAGCTC GTGCGCGGCT TTGCCAAGTC TACGGGTCTC ACACCTCATG CCTATCTCAT CCAGCGTCGG ATGGACATCG TCCGGCGGCT GATTGCCGGG GGCACGCCAC TCGCTGAAGC GGCAACTGCC GGTGGCTTCG CCGACCAGAG CCACATGACG CGCGTCTTCG TGCGCAAATA CGGCTTCTCG CCCGGTGCCT ATGCGCAGGC AATGAACTAA
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Protein sequence | MPKGHFRVLP RRIAGIDVVE ATTNHSFARH THEQFGIGLV HAGAQTSLSG RGTVAAEAGD VITVNPGEVH DGAPIGDLGR SWRMLYLDPP LVAALVNDVT EGKRSSCEFS DPVIRSPTLA GRFRAIFAAA IAVDSPGSTL CWDELAVTLF AEAMQLAPAR APASVSRSVA RAVNLIDHDP LASVTLEDLA RESGLSRFQL VRGFAKSTGL TPHAYLIQRR MDIVRRLIAG GTPLAEAATA GGFADQSHMT RVFVRKYGFS PGAYAQAMN
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