Gene Smed_3543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3543 
Symbol 
ID5324431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3748860 
End bp3749978 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content62% 
IMG OID640792493 
ProductDNA polymerase III subunit beta 
Protein accessionYP_001329194 
Protein GI150398727 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTATTA CTCTAGAGCG GTCCAACCTG TTGAAATCGC TGAACCATGT CCACCGTGTG 
GTGGAACGGC GAAATACGAT CCCGATCCTT TCGAACGTGC TCTTGCGCTC CGACGGCGCC
AGTCTCGAAA TGAAGGCGAC CGACCTCGAC CTGGAGATCA CCGAGGCGAC GCAGGCGCAG
GTCGAGCAGG CGGGCGCCAC GACCGTTCCG GCGCACCTGC TCTATGACAT CGTGCGCAAG
TTGCCCGACG GTTCAGAGGT GCTGCTTGCC ACCAATGCGG AGGGCACGGC GATGACGGTC
GCCTCCGGCC GCTCCAAATT TTCGCTGCAG TGCCTGCCCC AATCGGACTT CCCCGACCTG
ACCGCCGGCA CGTTCTCGCA TTCCTTCCGC CTGAAGGCGA CCGATCTGAA GATGCTGATC
GACCGCACGC AGTTCGCGAT TTCGACGGAA GAGACGCGCT ATTATCTGAA CGGCATTTTC
GTGCACACGG TCGAGAGCAA CGGCGAACTG AAGCTGCGCG CCGTCGCGAC CGACGGACAC
AGGCTCGCCC GTGCTGATGT CGAAGCCCCG TCCGGCTCCG AGGGCATGCC CGGCATCATC
ATCCCGCGCA AAACCGTAAG CGAATTGCAA AAATTGCTCG ACAATCCCGA CGTCGTCGTC
ACAGTCGAGG TCTCGGACGC GAAAATCCGG TTGACGATCG GCTCCATCGT CATGACGTCG
AAGCTGATCG ACGGGACCTT CCCCGACTAT CAGCGCGTGA TCCCCGCCAG CAATGACAAG
GAATTGCGCG TCGACTGCCA GTCCTTCTCG CAGGCCGTCG ACCGCGTCTC GACGATCTCG
TCCGAACGCG GACGCGCCGT GAAGCTGGCA CTCACCGATG GCCAGATGAC GCTGACGGTA
AACAACCCGG ATTCGGGCAG CGCCACCGAA GAAGTGCCGG TCGGCTACGA AAGTGATCCG
CTCGAGATCG GATTCAACGC AAAGTATCTT CTCGACATCA CCGCGCAACT GACCGGCAGC
GAGGCGGTCT TCCTGCTCGC AGATCCCGGT TCGCCGACGC TGGTACGCGA CCTGGCCGCG
GATGACGCGC TCTACGTCCT AATGCCGATG CGAGTCTAA
 
Protein sequence
MRITLERSNL LKSLNHVHRV VERRNTIPIL SNVLLRSDGA SLEMKATDLD LEITEATQAQ 
VEQAGATTVP AHLLYDIVRK LPDGSEVLLA TNAEGTAMTV ASGRSKFSLQ CLPQSDFPDL
TAGTFSHSFR LKATDLKMLI DRTQFAISTE ETRYYLNGIF VHTVESNGEL KLRAVATDGH
RLARADVEAP SGSEGMPGII IPRKTVSELQ KLLDNPDVVV TVEVSDAKIR LTIGSIVMTS
KLIDGTFPDY QRVIPASNDK ELRVDCQSFS QAVDRVSTIS SERGRAVKLA LTDGQMTLTV
NNPDSGSATE EVPVGYESDP LEIGFNAKYL LDITAQLTGS EAVFLLADPG SPTLVRDLAA
DDALYVLMPM RV