Gene Smed_3540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3540 
Symbol 
ID5324428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3746754 
End bp3747452 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content64% 
IMG OID640792490 
Productorotidine 5'-phosphate decarboxylase 
Protein accessionYP_001329191 
Protein GI150398724 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0284] Orotidine-5'-phosphate decarboxylase 
TIGRFAM ID[TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCAC GCGACCGGCT GATCGTCGGC CTTGATCTTC CAACGCTGGC CGAGGCCGAA 
AAAATCGTCT CGGCGCTCGG TGAGGAAGTC CTCTTCTATA AGATAGGCTA CCAACTGGCA
TTCGCTGGCG GTCTCGACTT CGCGCGCGAT CTCGCCGCGA GCGGCAAGCA GGTCTTTCTG
GACATGAAGC TGCTCGACAT CGACAACACG GTCGCGAAGG GCGTGGAGAA CATCGTCAAG
ATGGGCGTGT CGATGCTGAC GCTCCATGCC TATCCCAAGG CGATGAAATC AGCCGTCGAG
GCGGCCAGAG GCTCAAACCT CTGCCTGCTT GCAGTGACGG TGCTCACCTC CATGGACGAG
CAGGACGTGA TGGATGCCGG CTACAATTAT GATCCGCAAA GCCTGGTCCT GCGCCGTGCC
GAGCAGGCAC ACGCCGCGGG CATGGGAGGC ATTGTCTGCT CGGCGGCGGA GGCCGCCGCG
GTGCGCAAGA TCATTGGCGG CGACATGGCG CTGGTGACAC CGGGCATCCG CCCGGCCGGC
GCGGAAAAAG GCGACCAGAA GCGGGTGATG ACGCCGGCCG ATGCGCTTGC GGCCGGCTCG
AGCCATCTCG TCGTCGGGCG GCCAATCGTT GCCGCGCCTG ACCCTCTTGC AGCAAGCCGC
GCGATTCTGG CCGAGATGGA GAGCGCCCTT TCCGGCTGA
 
Protein sequence
MSARDRLIVG LDLPTLAEAE KIVSALGEEV LFYKIGYQLA FAGGLDFARD LAASGKQVFL 
DMKLLDIDNT VAKGVENIVK MGVSMLTLHA YPKAMKSAVE AARGSNLCLL AVTVLTSMDE
QDVMDAGYNY DPQSLVLRRA EQAHAAGMGG IVCSAAEAAA VRKIIGGDMA LVTPGIRPAG
AEKGDQKRVM TPADALAAGS SHLVVGRPIV AAPDPLAASR AILAEMESAL SG