Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3540 |
Symbol | |
ID | 5324428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 3746754 |
End bp | 3747452 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640792490 |
Product | orotidine 5'-phosphate decarboxylase |
Protein accession | YP_001329191 |
Protein GI | 150398724 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAC GCGACCGGCT GATCGTCGGC CTTGATCTTC CAACGCTGGC CGAGGCCGAA AAAATCGTCT CGGCGCTCGG TGAGGAAGTC CTCTTCTATA AGATAGGCTA CCAACTGGCA TTCGCTGGCG GTCTCGACTT CGCGCGCGAT CTCGCCGCGA GCGGCAAGCA GGTCTTTCTG GACATGAAGC TGCTCGACAT CGACAACACG GTCGCGAAGG GCGTGGAGAA CATCGTCAAG ATGGGCGTGT CGATGCTGAC GCTCCATGCC TATCCCAAGG CGATGAAATC AGCCGTCGAG GCGGCCAGAG GCTCAAACCT CTGCCTGCTT GCAGTGACGG TGCTCACCTC CATGGACGAG CAGGACGTGA TGGATGCCGG CTACAATTAT GATCCGCAAA GCCTGGTCCT GCGCCGTGCC GAGCAGGCAC ACGCCGCGGG CATGGGAGGC ATTGTCTGCT CGGCGGCGGA GGCCGCCGCG GTGCGCAAGA TCATTGGCGG CGACATGGCG CTGGTGACAC CGGGCATCCG CCCGGCCGGC GCGGAAAAAG GCGACCAGAA GCGGGTGATG ACGCCGGCCG ATGCGCTTGC GGCCGGCTCG AGCCATCTCG TCGTCGGGCG GCCAATCGTT GCCGCGCCTG ACCCTCTTGC AGCAAGCCGC GCGATTCTGG CCGAGATGGA GAGCGCCCTT TCCGGCTGA
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Protein sequence | MSARDRLIVG LDLPTLAEAE KIVSALGEEV LFYKIGYQLA FAGGLDFARD LAASGKQVFL DMKLLDIDNT VAKGVENIVK MGVSMLTLHA YPKAMKSAVE AARGSNLCLL AVTVLTSMDE QDVMDAGYNY DPQSLVLRRA EQAHAAGMGG IVCSAAEAAA VRKIIGGDMA LVTPGIRPAG AEKGDQKRVM TPADALAAGS SHLVVGRPIV AAPDPLAASR AILAEMESAL SG
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