Gene Smed_3525 details

Gene Information

• Locus tag: Smed_3525
• ID: 5324413
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 3728785
• End bp: 3733803
• Gene Length: 5019 bp
• Protein Length: 1672 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640792475
• Product: alpha beta-propellor repeat-containing integrin
• Protein accession: YP_001329176
• Protein GI: 150398709

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAAGATCG GAGAGGGCGG GCATCTGCTG CTCGACCCCA AAAACATCAT CATCGGCACC 
CCGGCAACCG TCTCGGGATG GGCCTATCAG GCGATCATTG GCGCAGGATA TGGCAAGAAC 
CGCAATGTCA TCGCGCTCGG TGCAAATGAT GGATTCGGTC TCTCTGTTTC GCTGAACGCG 
GCGGGGGACC GTTTGGCGGT CGGGGCGTAT CAGGACGACG GGTCCAGCGG CAACGTGTCC 
AATTCGGGCG CGGTGTATCT GTTCAGCTTC ACCGACACGA CGTTTTCGGG CGGCATGCTC 
GAGGCGGTGA TCGGCAAGGA CTATACGGGT GGCAAGAATG TCGATGTCGG CGCGCTCGGT 
GCGGATGATG GGTTCGGTGC TTCTGTTTCG CTGAACGCCG CGGGGGACCG ACTGGCGGCC 
GGGGCGTATC AGGACGACGG GTCCGGCGGC AACGTGTCCA ATTCGGGCGC GGTGTATCTG 
TTCAGCTTCA CCGACACGAC GTTTTCGAAT GGCTCGCTCG AGGCGGTGCT CGGCAAGGGC 
TATACGGGCG GCAAGAATGT CGATGTCGCC GCGCTCGCTC GGGAGGATCA GTTCGGTGTT 
TCTGTCTCGC TGAACGCGTC GGGGGACCGC CTGGCGGTCG CGGCGGATCT GGACGACGGG 
TCCGGCAAGA ACGTCTCCAA ATCGGGAGCG GTGTATCTGT TCAGCTTTAC GGATGCAGCG 
TTTTCGGGCG GCACGATCGA GGCGGTGCTC GGCAAGGGCT ATACGGACGG CAAGAATGTC 
GATGTCGCCG CGCTCGCTCC GGATGATCAG TTCGGTATTT CTGTCTCGCT GAACGCGGCG 
GGGAACCGGC TGGCGGTTGG AGCGATCGGC GACAACGGGT CTGGTGGCAC CTCCGTGAGC 
AGAGCCGGGG CGGTGTATCT GTTCAGCTTT ACGGATGCAG CGTTTTCGGG CGGAACGCTC 
GAAGCGGTGC TCGGCAAGGG CTATACGGGC GGCAAGAATG TCGATGTTGC CACGCTTGAG 
GTACTTGATG CGTTCGGCTC GTCGGTCTCG CTGAACGCGG ATGGGGACCT TCTGGCGGTC 
GGCCCATTTC TGGACGACGG GTCCGGCAAC GGCGTGAGAG ATTCGGGCGC GGTGTATCTG 
TTCAGCTTTA CCGACACGAA GTTTTCAGGT GGCCTGCTCG AGGCGGTGAT CGGCAAGGGT 
TATTCTAACG GTAAGAATGT CAATGTCGAC GCGCTCGGTG TAAACGATGG ATTCGGTGGT 
TCCGTCTCCC TGAACGGGGC GGGGGACCGT CTTGCGGTCG GGGCGAACCT GGACGACGGG 
TTCGGCAACC GCGTGAAAGA TTCGGGCGCG GTCTATCTGT TCAGTTTTAC GGATGCAGCG 
TTTTCGGGTG GCACGCTCGA GGCGGTGATC GGCAAGGGCT ATACGGGCGG CAAGAATGTC 
GATGTCGCTG CACTCGAGAA CGATGACTGG TTTGGTCATT CCGTCTCGCT GAACGCGTCG 
GGGGATCGTC TTGCGGTTGG GGCGAACCTG GACGACGGGT TCGGCAACGG CGTGAAAGAC 
TCGGGCGCGG TGTATCTGTT CAGCTTTACG GATGCAGCGT TTTCGGGTGG CGGGCTCAAG 
GCGGTGATTG GCAGGGGCTA TGATAATACT ACAGGCGATA AGAATGTGGA TGTCGCTGCG 
CTTGAGAGCG ACGATCGGTT CGGCTCGTCC GTCTCGCTGA ACGCGGCGGG GGATCGTCTG 
GCGGTCGGGG CGCCTGGCGA CGGGTCCGTG GTCGAAGCGG GCGCGGCATA TCTGTTCAGC 
TTCACCGATA GGGCATTTTC CGATGGGGCG CCCGAGCTGG TGATCGACAA GGACTATCCG 
GGCTTTAATG GTGCCGCGCT CGAGGAAGCT GATCGGTTCG GCTCGTCGGT CTCGCTGAAC 
GCGGCGGGGG ATCGGCTGGC GGTCGGGGCA CCTGGCGACG ACGGGCACGA CACCAGCCCG 
ATCATTGAAG ATAATAATTT TGGAGCGGTG TATCTGTTCA GCTTCACCGA TACGGCGTTT 
TCGGACAGTA CTCACGAGGC GGTGATCGGC AATGGCTATT CGGGCGGCAA GAATGTCGAT 
ATTGCCACGC TCGAGGACGG TGATACGTTC GGTTCGTCCG TCTCGCTGAA CGCGTCGGGG 
AACCGCCTGG CGGTCGGAGC GCTTGGCGGT AACGGGGCCA ATAACATCGA CGATTCGGGT 
GCAGCCTATC TGTTTCGCTT CACCGACACG GCGTTTTCGG GTGGTACGCA GGAGGCGGTG 
ATCGGCAATG GCTATTCGGG CGCCAACAAT GTCGATGTCT CGCTCGAGGA GGATGATAAG 
TTCGGTTCAT CCGTCTCGTT GAACGCGCTG GGGAACCTTC TGGCGATCGG GGCGCCTCTT 
GACGACGGAG CCGGCAACAG GGTGTCCGAT TCGGGAGCGG TTTATCTGTT TGCGGGCATC 
CTCGACGGCG ATTCGGTTTC GTCTGCCAAC TATGGCGATG ATCCCTCGGC TGACAGCTAT 
ATCCTGCCCT CCGACATCGT GTCGCTTCTT TCGGCGGGCA CGAATGTGAC CCTGCAGGCC 
AATAACGACA TCACTGTTGC CGAGGCGGTC GCCGTCACGG ACGGTTCGGC GAGGCTGACC 
TTGCAGGCAG GGCGTTCCGT TCTGATCGAT GCCGGCATAA CCAGCAATGG CGGGGATGTG 
ACGCTGATCG CCAATGATCT TTTGGAGAAC GGTGTGGTCG ACGCGCATCG GGACTCCGGC 
GCGGCGGTGA TCACCATGGC CCCGGGCACG GTGCTCGACG CGGGCACGGG GGCTGTGATC 
TTCGACCTGC GTGCCGGTAC GGGCAAGACC AAAAGGCAAG GCGGCGACAT CACGGTGGGC 
ACGGTGAATG CGGGGTCGAT CCTGGCGGTA AACGCCGGGC CGAACGGGAA GTCGGGGATC 
GTGCTCGGCA GCGGATCGGT GCTGACGGCT TCGGCCACGG GCAATGCGAT CGTTCTGGCC 
GGTGATCGCT TTACCAACAG GTCAGGCGCC TCGCCGCTGC AGGCGTCAGG CGGGCGCTGG 
CTGGTGTGGT CCGGGAACCC GGCGGACGAT ACGCGCGGCG GTCTTTCCTA CGGGTTCAAG 
CAGTATAATG CGAAATATGG TGAGACGGCA GTCGCCCAGG GCGCGGGCAA CGGTTTTCTC 
TATAGCCTTG CCCCCAAGAT CACGGTGGGT CTGACCGGCA CGGTGTCGAA GGCCTATGAC 
GGGACGACCG GTGCGGTTCT GGCCGGGGGC AATTACACGG TCTCGGGCGC GGTGGATGGC 
GATACGGTGA GTATTACGCA GACCGCGGGC AGCTACGACA CAAAGCATGT CGGCACGGGC 
AAGACCGTGA CGGCGAGCCT GGCCGACAGC CACCTGAGCG CGGTCAATGG CACGGTGAAG 
GTCTATGGCT ACAAAACGGT CAATATGAGC GCAGCGGGCC CGGTGGGCGA GATCACGGCG 
CGTGCGCTGA CGGTTTCGAC AGAGGCCGTG AGCAAGGTCT ATGACGGGAC CGTTTCGGCG 
TCGGGCACGG CGATCGTGAC GTCGGGCGCG CTGCAGGGTA GCGACACGCT CTCCGGCGGC 
AGCTTTGCGT TCGCCGACAA ACATGCGGGC GCCGGCAAGA CGGTGACGGT CTCGGATGTG 
ACGATCGACG ACGGCAATTC GGGCGGCAAC TACATCCTGA CCTATGCCGA TAATACCGCC 
AGCGAGATCA CGGCGCGTGC GCTGACGGTT TCGACAGAGG CCGTGAGCAA GGTCTATGAC 
GGGACCGTTT CGGCGTCGGG CACGGCGATC GTGACGTCGG GTGCGCTGAA GGGCAGCGAC 
ACGCTCTCCG GCGGTAGCTT TGCGTTCGCC GACAAACATG CGGGCGCCGG CAAGACGGTG 
ACGGTCTCGG ATGTGACGAT CGACGACGGC AATTCGGGCG GCAACTACAT CCTGACCTAT 
GCCGATAATA CCGCCAGCGA GATCACGGCG CGTGCGCTGA CGGTTTCGAC AAAGGCCGTG 
AGCAAGGTCT ATGACGGGAC CGTTTCGGCG TCGGGCACGG CGATCGTGAC GTCGGGTGCG 
CTTCAGGGCA GCGACACGCT CTCCGGCGGT AGCTTCGCGT TCGCCGACAA GCATGCGGGC 
GCCGGCAAGA CGGTGACGGT TTCGGATGTG ACGCTCAATG ACGGCAATTC CGGCGGCAAC 
TACATCCTGA CCTATGCCGA TAATACCGCC AGCGAGATCA CGGCGCGTGC GCTGACGGTT 
TCGACAAAGG CCGTGAGCAG GGTCTATGAC GGGACCGTTT CGGCGTCGGG CACGGCGATC 
GTGACGTCGG GTGCGCTTCA GGGCAGCGAC ACGCTCTCCG GCGGTAGCTT CGCGTTCGCC 
GACAAGCATG CGGGCGCCGG CAAGACGGTG ACGGTTTCGG ATGTGACGCT CAATGACGGC 
AATTCCGGCG GCAACTACAT CCTGACCTAT GCCGATAACA CCGCCAGCGA GATCACGGCG 
CGTGTGCTGA CGGTTTCGCT CAGCGGTACG GTGTCGAAGG TCTATGACGG CGCGACGGCA 
GCGACGCTGT CTCCCGGCAA TTACAGCCTG TCGGGCCTTG TGCCGGGCGA CGTCGTTTCG 
ATTGTGCTCC TGTCGAGCAA TTACGATACC GCGGATATCG GCACAGGCAA GACGGTGAGC 
GTTGCCGGGC TTAGTCTGTC GGGTGTGGAT AAGGCCAACT ATCTGCTCGG CTCGAGTGCG 
GCGAGCGCGG CGATCGGGGA GATCACGTCG GCCGTCACCC CGTGGGATGA CAGCGTCAAG 
CAGGTCGTAG AGCCCTTGTT CGATCAGGAA GAGTCGGGCA AGCCGGACCG CGTGAGCTTG 
GATGAGACGC TGGGAATCAG AACCGGTAAC CGCCTCGACT CGGGCGCTGG TTTGCTGGTG 
AACTGCATGG AGCCGGAGGG GCGGGTGTTG AAACTGGTCG GCTCGCCCGT CGATGTCACG 
GGGTGGCAGG TCGCAACCTG TATGAGCGGT AGCCTATAG 

 

Protein sequence

MKIGEGGHLL LDPKNIIIGT PATVSGWAYQ AIIGAGYGKN RNVIALGAND GFGLSVSLNA 
AGDRLAVGAY QDDGSSGNVS NSGAVYLFSF TDTTFSGGML EAVIGKDYTG GKNVDVGALG 
ADDGFGASVS LNAAGDRLAA GAYQDDGSGG NVSNSGAVYL FSFTDTTFSN GSLEAVLGKG 
YTGGKNVDVA ALAREDQFGV SVSLNASGDR LAVAADLDDG SGKNVSKSGA VYLFSFTDAA 
FSGGTIEAVL GKGYTDGKNV DVAALAPDDQ FGISVSLNAA GNRLAVGAIG DNGSGGTSVS 
RAGAVYLFSF TDAAFSGGTL EAVLGKGYTG GKNVDVATLE VLDAFGSSVS LNADGDLLAV 
GPFLDDGSGN GVRDSGAVYL FSFTDTKFSG GLLEAVIGKG YSNGKNVNVD ALGVNDGFGG 
SVSLNGAGDR LAVGANLDDG FGNRVKDSGA VYLFSFTDAA FSGGTLEAVI GKGYTGGKNV 
DVAALENDDW FGHSVSLNAS GDRLAVGANL DDGFGNGVKD SGAVYLFSFT DAAFSGGGLK 
AVIGRGYDNT TGDKNVDVAA LESDDRFGSS VSLNAAGDRL AVGAPGDGSV VEAGAAYLFS 
FTDRAFSDGA PELVIDKDYP GFNGAALEEA DRFGSSVSLN AAGDRLAVGA PGDDGHDTSP 
IIEDNNFGAV YLFSFTDTAF SDSTHEAVIG NGYSGGKNVD IATLEDGDTF GSSVSLNASG 
NRLAVGALGG NGANNIDDSG AAYLFRFTDT AFSGGTQEAV IGNGYSGANN VDVSLEEDDK 
FGSSVSLNAL GNLLAIGAPL DDGAGNRVSD SGAVYLFAGI LDGDSVSSAN YGDDPSADSY 
ILPSDIVSLL SAGTNVTLQA NNDITVAEAV AVTDGSARLT LQAGRSVLID AGITSNGGDV 
TLIANDLLEN GVVDAHRDSG AAVITMAPGT VLDAGTGAVI FDLRAGTGKT KRQGGDITVG 
TVNAGSILAV NAGPNGKSGI VLGSGSVLTA SATGNAIVLA GDRFTNRSGA SPLQASGGRW 
LVWSGNPADD TRGGLSYGFK QYNAKYGETA VAQGAGNGFL YSLAPKITVG LTGTVSKAYD 
GTTGAVLAGG NYTVSGAVDG DTVSITQTAG SYDTKHVGTG KTVTASLADS HLSAVNGTVK 
VYGYKTVNMS AAGPVGEITA RALTVSTEAV SKVYDGTVSA SGTAIVTSGA LQGSDTLSGG 
SFAFADKHAG AGKTVTVSDV TIDDGNSGGN YILTYADNTA SEITARALTV STEAVSKVYD 
GTVSASGTAI VTSGALKGSD TLSGGSFAFA DKHAGAGKTV TVSDVTIDDG NSGGNYILTY 
ADNTASEITA RALTVSTKAV SKVYDGTVSA SGTAIVTSGA LQGSDTLSGG SFAFADKHAG 
AGKTVTVSDV TLNDGNSGGN YILTYADNTA SEITARALTV STKAVSRVYD GTVSASGTAI 
VTSGALQGSD TLSGGSFAFA DKHAGAGKTV TVSDVTLNDG NSGGNYILTY ADNTASEITA 
RVLTVSLSGT VSKVYDGATA ATLSPGNYSL SGLVPGDVVS IVLLSSNYDT ADIGTGKTVS 
VAGLSLSGVD KANYLLGSSA ASAAIGEITS AVTPWDDSVK QVVEPLFDQE ESGKPDRVSL 
DETLGIRTGN RLDSGAGLLV NCMEPEGRVL KLVGSPVDVT GWQVATCMSG SL