Gene Smed_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3500 
Symbol 
ID5324388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3706813 
End bp3707307 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content65% 
IMG OID640792452 
ProductMarR family transcriptional regulator 
Protein accessionYP_001329153 
Protein GI150398686 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGACGG AAATGGATCA CGTCGACAAA ATTCTGGCGC AATGGCGCCG AGAGCGGCCC 
GACCTCGACG TAGTGGCCAT GGGCCTGCTC GGTCGCCTGT CGCGGCTTCG GGCTCATCTG
GCGCGTGAGA TCGACAGCAC GCTCACCGAG CATGGCCTGA ACTCCGCGAG TTTCGACGTG
CTCGCAACGC TTCGGCGCTC CGGCCCGCCT TTCCGGCTTT CGCCGGGCGA CCTGCTGTCG
GCCACGATGG TCACCTCCGG GACCATGACC AACCGCATCG ACCAACTCGA AAAGGCCGGG
CTGGTCGAAC GTCTGGACAA CCCGGAAGAC CGGCGCGGCG TCATTATCGC GCTTACGCCA
GAGGGGTTGA AACGCGTCGA TGCGGCGGTC ACCGCCCATG TCGCCAACCA ACAGCGCCTC
GTCGCGAGCC TCGAGCCGGA TGAGCGGGAC GCCATGAACG CGCTGCTCAG GAATTTCCTC
GCGGTATTCG AATAG
 
Protein sequence
MRTEMDHVDK ILAQWRRERP DLDVVAMGLL GRLSRLRAHL AREIDSTLTE HGLNSASFDV 
LATLRRSGPP FRLSPGDLLS ATMVTSGTMT NRIDQLEKAG LVERLDNPED RRGVIIALTP
EGLKRVDAAV TAHVANQQRL VASLEPDERD AMNALLRNFL AVFE