| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3497 |
|---|
| Symbol | |
|---|
| ID | 5324385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3703732 |
|---|
| End bp | 3704523 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640792449 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001329150 |
|---|
| Protein GI | 150398683 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.731852 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCG GCAGCCGTCT GAAGGAATGG CGAGGACATC GCCGCATGAG CCAGCTTGAT
CTCGCGAACG CTGCGGGAAT TTCCGCGCGC CACCTCTCGT TTCTCGAGAC GGGCCGCTCA
AAGCCGACGG AGGGAATGAT CCTGAGGCTC GCCTCTGTCC TCGACGTTCC CGCGCGCGAA
CAGGGCACGC TCTTCACCGC CGCGGGATAT CGGCCGCGCG TTTCCACGAA GGCCGCAGCG
GGACTTGATG CGATGCCGCC GGCCGTCGCC CAGGCCATCA GGCTTATGCT GGATCGGCAC
CAACCTTATC CCGGACTGGT TTTCGATCAT CACTATACGG TGCTGCTGAT CAATCCGGCT
TTCGAAGCAC TTGTCGATGC CACCGGGGTT CCGTTCAAGC CGGGGGAGAA CTTTCTCGAC
GGTTTTCTCG GCGCAGAAAG CGTCCGCGGC CTCGTCATGA ACTGGGAAGC CGCCGCGGCC
GATCTCGTTC ATCGGGTGCG CATGGAAGCG TGGCTGCAGG GGCCGCGCAG TCCCTTGCAG
CGAAGGCTGG ACAGGCTGGT TGCCGATCCG GCCGTCGGAA AGGCGATCGA GAACTTCCCC
ACGACAGACC GCTTGCCGGT GCTGCCGATT GAACTGCGCC TCGGCGATAC GGAGCTCAGC
TTCATTACGA CTCTCTCGAC CTTCGGCTCG GCTCAGGATG CGCTGGTGGA GGGGGTTCTG
ATCGAATCCT TCTTTCCGGC CGACGATGCG ACCCGGCGCT TCTTCGGGCA GAGCGGGCGC
GACGTCCAAT AG
|
|---|
| Protein sequence | MEFGSRLKEW RGHRRMSQLD LANAAGISAR HLSFLETGRS KPTEGMILRL ASVLDVPARE
QGTLFTAAGY RPRVSTKAAA GLDAMPPAVA QAIRLMLDRH QPYPGLVFDH HYTVLLINPA
FEALVDATGV PFKPGENFLD GFLGAESVRG LVMNWEAAAA DLVHRVRMEA WLQGPRSPLQ
RRLDRLVADP AVGKAIENFP TTDRLPVLPI ELRLGDTELS FITTLSTFGS AQDALVEGVL
IESFFPADDA TRRFFGQSGR DVQ
|
|---|
| |