| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3458 |
|---|
| Symbol | rpsA |
|---|
| ID | 5324345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3665828 |
|---|
| End bp | 3667534 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640792409 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_001329111 |
|---|
| Protein GI | 150398644 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCAA CCAACCCCAC CCGTGATGAT TTCGCAGCGC TTCTGGAAGA GTCCTTCGCC
AAGACGGACC TCGCCGAAGG CTACGTCGCC AAGGGCATCG TCACGGCGAT CGAAAAGGAC
GTCGCAATCG TCGACGTCGG CCTGAAGGTC GAAGGCCGCG TACCGCTGAA GGAATTCGGC
GCCAAGGCCA AGGACGGCAC GCTCAAGGTC GGCGACGAAG TCGAAGTCTA TGTCGAGCGC
ATTGAAAACG CTCTCGGCGA AGCTGTTCTG TCGCGCGAGA AGGCTCGCCG CGAAGAAAGC
TGGCAGCGCC TGGAAGTGAA GTTCGAAGCC GGCGAACGCG TCGAAGGCAT CATCTTCAAC
CAGGTCAAGG GCGGCTTCAC CGTCGATCTC GACGGCGCCG TAGCCTTCCT GCCGCGTTCG
CAGGTCGACA TCCGTCCGAT CCGCGACGTG ACCCCGCTGA TGCACAACCC GCAGCCCTTC
GAAATCCTGA AGATGGACAA GCGCCGCGGC AACATCGTCG TTTCGCGCCG CACGGTTCTC
GAAGAGTCGC GCGCCGAGCA GCGTTCTGAA ATCGTTCAGA ATCTCGAGGA GGGCCAGGTT
GTCGAGGGTG TCGTCAAGAA CATCACCGAT TACGGTGCGT TCGTCGACCT CGGCGGCATC
GACGGTCTGC TGCACGTCAC CGACATGGCA TGGCGTCGCG TCAATCATCC GTCGGAAATC
CTGAACATCG GCCAGCAGGT CAAGGTTCAG ATCATCCGCA TCAACCAGGA AACCCACCGC
ATCTCGCTCG GCATGAAGCA GCTCGAGTCC GATCCGTGGG ACGGCATCGG TGCGAAGTAT
CCGGTCGGCA AGAAGATCTC GGGCACGGTT ACGAACATCA CCGACTACGG TGCTTTCGTC
GAGCTGGAGC CGGGCATCGA AGGCCTGATC CACATTTCCG AGATGTCCTG GACGAAGAAG
AACGTTCACC CCGGCAAGAT CCTGTCCACG AGCCAGGAAG TCGACGTGGT CGTTCTCGAA
GTCGATCCGA CCAAGCGCCG CATTTCGCTC GGCCTCAAGC AGACGCTCGA GAACCCATGG
CAGGCATTCG CGCATAGCCA TCCGGCTGGC ACGGAAGTCG AAGGCGAAGT CAAGAACAAG
ACTGAATTCG GTCTGTTCAT CGGCCTCGAT GGCGATGTCG ACGGCATGGT TCACCTCTCC
GATCTCGACT GGAACCGTCC GGGCGAGCAG GTCATCGAAG AATTCAACAA GGGCGACGTC
GTCCGTGCTG TGGTTCTCGA TGTGGACGTC GACAAGGAGC GTATCTCGCT CGGCATCAAG
CAGCTCGGCC GTGATGCGGT CGGTGAAGCT GCTGCTTCCG GCGACCTGCG CAAGAATGCC
GTCGTTTCGG CCGAAGTCAT CGGCGTCAAC GATGGCGGCA TCGAGGTGCG GCTCGTCAAT
CACGAGGACG TCACCGCCTT CATCCGCCGC GCTGATCTCT CGCGCGACCG CGACGAACAG
CGTCCGGAGC GCTTCTCGGT CGGCCAGACC GTCGACGCGC GCGTCACCAA CTTCTCCAAG
AAGGACCGCA AGATCCAGCT GTCGATCAAG GCTCTGGAAA TCGCGGAAGA GAAGGAAGCC
GTCGCTCAGT TCGGCTCTTC CGACTCGGGT GCTTCGCTTG GCGACATTCT GGGCGCTGCG
CTCAAGAACC GCCAGAACAA CGAGTAA
|
|---|
| Protein sequence | MSATNPTRDD FAALLEESFA KTDLAEGYVA KGIVTAIEKD VAIVDVGLKV EGRVPLKEFG
AKAKDGTLKV GDEVEVYVER IENALGEAVL SREKARREES WQRLEVKFEA GERVEGIIFN
QVKGGFTVDL DGAVAFLPRS QVDIRPIRDV TPLMHNPQPF EILKMDKRRG NIVVSRRTVL
EESRAEQRSE IVQNLEEGQV VEGVVKNITD YGAFVDLGGI DGLLHVTDMA WRRVNHPSEI
LNIGQQVKVQ IIRINQETHR ISLGMKQLES DPWDGIGAKY PVGKKISGTV TNITDYGAFV
ELEPGIEGLI HISEMSWTKK NVHPGKILST SQEVDVVVLE VDPTKRRISL GLKQTLENPW
QAFAHSHPAG TEVEGEVKNK TEFGLFIGLD GDVDGMVHLS DLDWNRPGEQ VIEEFNKGDV
VRAVVLDVDV DKERISLGIK QLGRDAVGEA AASGDLRKNA VVSAEVIGVN DGGIEVRLVN
HEDVTAFIRR ADLSRDRDEQ RPERFSVGQT VDARVTNFSK KDRKIQLSIK ALEIAEEKEA
VAQFGSSDSG ASLGDILGAA LKNRQNNE
|
|---|
| |