Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3456 |
Symbol | |
ID | 5324343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3663656 |
End bp | 3665026 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640792407 |
Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
Protein accession | YP_001329109 |
Protein GI | 150398642 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCACG GCTCGAACCC GCGACCCGCC ACCGCACGCA AGTCTTCCGA CCTCAAGGGC ACGGTGCGCA TCCCGGGCGA CAAGTCGATC TCGCACCGCT CCTTCATGTT CGGCGGCCTT GCTTCGGGTG AGACGCGCAT CACCGGACTC CTCGAAGGCG AAGACGTGAT CAATACCGGC AGGGCCATGC AGGCGATGGG TGCCAAAATT CGCAAGGAGG GCGACACCTG GATCATCGAC GGCGTCGGGA ACGGTGCGCT GCTCGCGCCC GAGGCGCCGC TCGACTTCGG CAATGCGGGA ACCGGCTGCC GTCTGACCAT GGGCCTCGTC GGCGTCTATG ATTTCGATTC CACCTTCATC GGCGACGCCT CGCTGACGAA GCGCCCGATG GGCCGCGTGC TCGATCCGCT CCGCGAAATG GGTGTCCAGG TGAAGTCGGC CGAGGGCGAC CGGTTGCCGG TGACGCTGCG CGGACCGAAG ACGCCGAACC CGATCACCTA TCGCGTGCCG ATGGCTTCGG CCCAGGTGAA ATCCGCCGTG CTGCTCGCCG GGCTGAACAC GCCCGGCATC ACCACCGTCG TCGAGCCGGT AATGACCCGC GACCATACGG AAAAGATGCT CCAGGGCTTC GGCGCGGACC TTTCGGTCGA GACCGACAGA GACGGCGTGC GCACCATCCG GCTCGAAGGC CGAGGCAAGC TGAGGGGTCA GGTGATCGAC GTGCCGGGCG ATCCGTCTTC CACGGCCTTT CCGCTGGTGG CGGCGCTTCT TGTGCCGGGG TCCGACCTTA GCATTTTCAA CGTGCTGATG AACCCGACCC GTACAGGGCT CATTCTAACG CTTCAGGAAA TGGGTGCCAG GATCGAAGTG CTGAGCAGCC GGCTTGCCGG TGGCGAGGAT GTCGCCGATC TGCGCGTACG CTATTCGGAA CTCAAGGGCG TGACGGTACC GGAAGAGCGC GCACCCTCGA TGATCGACGA ATATCCCGTG CTTGCCGTCG CGGCCGCCTT CGCCGAAGGC GCAACGGTGA TGAACGGGCT GGAGGAACTG AGGGTCAAGG AATCCGATCG CCTGTCCGCC GTTGCCGAGG GACTGAAGCT CAACGGCGTC GATTGCGACG AGGGCGAGGC CTCGCTCGTC GTACGCGGCC GGCCGGGCGG CAAGGGCCTG GGCAATGATT CGGGCGGCCA GGTCAAAACC CATCTCGATC ACCGCATCGC CATGAGCTTC CTTGTCATGG GGCTTGCCTC GGAGCGTCCG GTGACGGTCG ACGATGCGAC GATGATCGCG ACGTCCTTCC CCGAGTTCAT GGGACTGATG ACAGGGTTGG GCGCGAAGAT CGAAGAGACG GAAAACAAGG CGGCCCTATG A
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Protein sequence | MSHGSNPRPA TARKSSDLKG TVRIPGDKSI SHRSFMFGGL ASGETRITGL LEGEDVINTG RAMQAMGAKI RKEGDTWIID GVGNGALLAP EAPLDFGNAG TGCRLTMGLV GVYDFDSTFI GDASLTKRPM GRVLDPLREM GVQVKSAEGD RLPVTLRGPK TPNPITYRVP MASAQVKSAV LLAGLNTPGI TTVVEPVMTR DHTEKMLQGF GADLSVETDR DGVRTIRLEG RGKLRGQVID VPGDPSSTAF PLVAALLVPG SDLSIFNVLM NPTRTGLILT LQEMGARIEV LSSRLAGGED VADLRVRYSE LKGVTVPEER APSMIDEYPV LAVAAAFAEG ATVMNGLEEL RVKESDRLSA VAEGLKLNGV DCDEGEASLV VRGRPGGKGL GNDSGGQVKT HLDHRIAMSF LVMGLASERP VTVDDATMIA TSFPEFMGLM TGLGAKIEET ENKAAL
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