Gene Smed_3402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3402 
Symbol 
ID5324286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3610228 
End bp3611067 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content61% 
IMG OID640792353 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001329058 
Protein GI150398591 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAAAG CACGCGCCTC CTACATCCGT ATCGGCGCCG TTCACGCGGC ATTGATCGCC 
TATACGCTCG TCGCCCTGTT TCCGGTCTTC CTGACGATCG CGAATTCGTT CAAGAGCCGC
AACGCGATCT TCCGGGAGCC ACTGGCAATC CCGACACCCG AAACCTTCAG CCTGATCGGC
TACGAAACGG TGCTGAAACA GGGTGACTTC GTCGGCTATT TCCAGAACAG CATCATCGTC
ACCGTGGTCT CGATCGCGCT CGTCCTGCTC TTCGGCGCCA TGGCAGCCTT TGCCCTTTCC
GAATACCGCT TCCGCGGCAA TACGCTGATG GGGCTCTATC TCGCGTTGGG CATCATGATC
CCGATCCGGC TCGGCACGGT CGCCATCCTT CAGGGCATGG TGGCGGCCGA TCTCGTCAAT
ACGCTGACGG CGCTGATCCT CGTCTATACG GCGCAAGGTC TGCCGCTCGC GGTGTTCATC
CTGTCGGAGT TCATGCGCAC CGTGTCGGAC GACCTGAAGA ATGCAGGGCG CATCGACGGG
TTGTCCGAAT ATGCGATCTT CCTGCGGCTG GTGCTGCCGC TGATCCGACC GGCCATGGCG
ACGGTCGCCG TCTTCACCAT GATCCCCATC TGGAACGACC TGTGGTTCCC GCTGATCCTC
GCGCCGGCCG AGGCGACCAA GACCGTCACG CTCGGCTCGC AGATCTTCAT CGGCCAGTTC
GTCACCAACT GGAACGCAGT TCTCTCGGCA CTGTCGCTGG CGATCTTCCC GGTGCTCGTC
CTCTACGTCA TCTTCTCGCG GCAACTGATC CGCGGCATCA CGGCAGGAGC AGTCAAGTGA
 
Protein sequence
MSKARASYIR IGAVHAALIA YTLVALFPVF LTIANSFKSR NAIFREPLAI PTPETFSLIG 
YETVLKQGDF VGYFQNSIIV TVVSIALVLL FGAMAAFALS EYRFRGNTLM GLYLALGIMI
PIRLGTVAIL QGMVAADLVN TLTALILVYT AQGLPLAVFI LSEFMRTVSD DLKNAGRIDG
LSEYAIFLRL VLPLIRPAMA TVAVFTMIPI WNDLWFPLIL APAEATKTVT LGSQIFIGQF
VTNWNAVLSA LSLAIFPVLV LYVIFSRQLI RGITAGAVK