| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3399 |
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| Symbol | |
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| ID | 5324283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3606549 |
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| End bp | 3607769 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640792350 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001329055 |
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| Protein GI | 150398588 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.852955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATTG CGATGCGCAT GAACCGACCG ATTTTGGCCG CCTCGCTGGC AACCGTGATT
TTTCTCGCGG GGTGCCAGAA GAATGAAGAA CAGGCCGCGG CTCCCGCCCC TCCCCCGTCG
CCGGTCGCCG TCTTCACGAC GAAGGCCGAA CCACTTCCGA TCACCAACGA ACTCCCGGGT
CGCATCACCG CTACCCGGAT TGCCGAGGTC CGCCCGCGCA TCTCAGGTAT CGTCGTCGAG
CGGGTGTTCG AACAGGGCAC CATGGTGAAG GAAGGCGATG TGCTCTACCG CATCGACCCG
GCGCCGTTCC AGGTAAAGGT CGACAGCGCC GAGGCTACGC TGAAGCGCGC CAAGTCCCTG
GTCGATCAGG CCAGGCGAAC GGCCGACCGC CAATCGCGGC TGAAGGAAGC GCAGGTTACA
GCGGTGCAGC AATACGACGA CGCCATAGCG ACCCTTGCCC AGGCAGAGGC CGATGTCGGC
ATCGCCGAGG CTGGTCTCGC GGAGGCCAGG CTCAATCTGC AATATACGAA CGTCACGGCT
CCGATCAGCG GCCGGATCGG CCGGGCGCTG ATCACCGAAG GCGCCCTCGT CAACACCAAC
GATACGCAGA ACCTCGCGAC GATCCAACAG CTGGACCCGA TCTATGCCGA CTTCACCCAG
TCCGCGACCG ACCTGATCCG CCTGCGCAAG GCGCTCAAGG ACGGCAAGTG GATGAGCTCC
AAAAACGAAG CCGAGGTGCA GCTGATCCTC GATGACGGCA CGCCCTATGC CCTCAAGGGC
AAGCTGCTCT TTTCCGAAGC CGCCGTCGAT GCGACGACCG GTCAGGTGAC GCTGCGCGGC
GAATTCCCCA ATCCGAACAA TGACCTGCTG CCCGGCATGT ATGTCCGCGT ACAAATCCAG
CAAGGTCTCG AAGAGGACGC GATCACCGTT CCGCAACAGG CGGTCCAGCG CAACAATGCC
GGCCAGTCGC AGGTCTATGT CGTGACTGCC GACAACAAGG TGGAGTTCCG CAACGTCACT
CTCGGACGCA TTGTCAGCCA GCGCTGGCAG GTGACGTCGG GCCTGAAGCC CGGCGAAAAG
GTCATCGTCG AGGGCTTCCA GAAGATCGGC CCGGGCGCAC CCGTGCAGCC TTCGGATTGG
GATCCGAACG CCAAGCCTGC GCCCGAACAG GCCAGCGCGT CGGCAGATGC CGGCAAAAAG
CCCGCCACCG ACGCGAAGTG A
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| Protein sequence | MDIAMRMNRP ILAASLATVI FLAGCQKNEE QAAAPAPPPS PVAVFTTKAE PLPITNELPG
RITATRIAEV RPRISGIVVE RVFEQGTMVK EGDVLYRIDP APFQVKVDSA EATLKRAKSL
VDQARRTADR QSRLKEAQVT AVQQYDDAIA TLAQAEADVG IAEAGLAEAR LNLQYTNVTA
PISGRIGRAL ITEGALVNTN DTQNLATIQQ LDPIYADFTQ SATDLIRLRK ALKDGKWMSS
KNEAEVQLIL DDGTPYALKG KLLFSEAAVD ATTGQVTLRG EFPNPNNDLL PGMYVRVQIQ
QGLEEDAITV PQQAVQRNNA GQSQVYVVTA DNKVEFRNVT LGRIVSQRWQ VTSGLKPGEK
VIVEGFQKIG PGAPVQPSDW DPNAKPAPEQ ASASADAGKK PATDAK
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