| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3395 |
|---|
| Symbol | recF |
|---|
| ID | 5324279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3600571 |
|---|
| End bp | 3601800 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640792346 |
|---|
| Product | recombination protein F |
|---|
| Protein accession | YP_001329051 |
|---|
| Protein GI | 150398584 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.714394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGATCCG CTACACGCAC AAGGGCGGTC AGCGCCGGAT GCCCTTCCGC TTGCCTTGAG
GCTGCTTTCG TCCTACCTGA CAGCAACGTC GAATTCGGAC CCGCAATGCC CCACAAGGTC
TTTCTCACAC GCCTGAAACT GAGCGATTTC CGCAACTATG CAACGGCGGC GCTCGACCTC
GACCAGCGCC ATGTGGTGCT GACCGGCGAG AACGGCGCTG GCAAGACCAA CCTGATGGAG
GCGATCTCTT TTCTGTCTCC CGGGCGAGGC TTGAGGCGCG CTGCGTATGC CGATGTCGTC
CGCGTCGGCG CCGCTGACGG CTTCTCGGTC TTCGCCGCTG TCGATGGGAT GGAGGGGCCG
GTGGAGATCG GCACGGGGAC TCAGGGATCC GAGGAGGGTC ATTCGCGCCG CCTCAGAATC
AACGGCACTG CGGCGCGCAC CGTCGACGAA CTCAACGACC ACCTCCGGGT GCTCTGGCTG
ACCCCCGCGA TGGATGGCCT TTTTACCGGC CCTTCCGCCG ACCGCAGGCG CTTTCTCGAC
CGGCTGGTGC TTTCGCTCGA TCCCGAGCAC GGCCGCCGCG CCAGCGAGTT CGACCGCGCC
ATGCGCAGCC GCAACAGGCT TCTTTCGGAG TTCCGCCCCG ATCCCGCCTG GGTATCGGCC
ATCGAACGCG AAATGGCCGG CCTCGGCATT TCCATGGCGC TTGCCCGCCA GGAGATGCTC
GGCCTGCTTT CCGCTCTCGT CGACCGTAGC AGGACCGACG GGACCTTTCC GTCCGCACGT
CTTTCGCTTG CCGGCTTCCT CGATGACTGC GCCGGTATTC CGGCCTTTGA ACTCGAAGAG
CGCTATCTCG CAATGCTCGC TGATGGCCGG GCGCGCGATG CCGCCGCCGG CCGCACGCTC
GACGGGCCGC ACCGCAGTGA TCTCCTGATC CGCCACCGGG AAAAGGACAT CGAAGCCGAG
CGTTGCTCGA CCGGCGAACA GAAGGCGCTG CTCGTCGGCC TGGTGCTCGC GCATGCACGC
CTCGTCGGCG ACATGACGGG CCACGCCCCG GTGCTGCTGC TCGACGAAAT CGCCGCCCAT
CTCGACCAGG GACGCCGTGC CGCCCTCTTC GACCTCGTCG ATGGGCTCGG CGGCCAGGCC
TTCATGACGG GCACCGACCA AACCATGTTC GAGGCGCTCG GGGAGCGCGC GCATTATCTG
GCCGTTGCAA ACGGCCGCGT TTCAGGATGA
|
|---|
| Protein sequence | MRSATRTRAV SAGCPSACLE AAFVLPDSNV EFGPAMPHKV FLTRLKLSDF RNYATAALDL
DQRHVVLTGE NGAGKTNLME AISFLSPGRG LRRAAYADVV RVGAADGFSV FAAVDGMEGP
VEIGTGTQGS EEGHSRRLRI NGTAARTVDE LNDHLRVLWL TPAMDGLFTG PSADRRRFLD
RLVLSLDPEH GRRASEFDRA MRSRNRLLSE FRPDPAWVSA IEREMAGLGI SMALARQEML
GLLSALVDRS RTDGTFPSAR LSLAGFLDDC AGIPAFELEE RYLAMLADGR ARDAAAGRTL
DGPHRSDLLI RHREKDIEAE RCSTGEQKAL LVGLVLAHAR LVGDMTGHAP VLLLDEIAAH
LDQGRRAALF DLVDGLGGQA FMTGTDQTMF EALGERAHYL AVANGRVSG
|
|---|
| |