Gene Smed_3389 details

Gene Information

• Locus tag: Smed_3389
• Symbol: dnaK
• ID: 5324273
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 3593690
• End bp: 3595615
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640792340
• Product: molecular chaperone DnaK
• Protein accession: YP_001329045
• Protein GI: 150398578
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR02350] chaperone protein DnaK

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTAAAG TTATTGGTAT TGACCTGGGA ACGACCAACT CCTGCGTCTC CGTCATGGAC 
GGAAAGGACG CGAAGGTAAT CGAGAACGCC GAGGGCGCGC GCACGACCCC CTCGATGGTG 
GCATTCACCG AAGACGGCGA ACGTCTCGTC GGACAGCCGG CCAAGCGCCA GGCCGTGACC 
AATCCCGAGA ACACGCTTTT TGCGATCAAG CGCCTGATCG GCCGCACCTT CGAGGATCCG 
ACGACCCAGA AGGACAAGGG GATGGTCCCC TATAAGATCG TCAAGGCCGA TAATGGCGAC 
GCCTGGGTCG AAGCCCATGA CAAGAGCTAT TCTCCCTCGC AGATTTCCGC GATGATCCTT 
CAGAAAATGA AGGAAACGGC CGAGTCCTAT CTCGGTGAAA AGGTTGAGAA AGCGGTTATC 
ACCGTTCCGG CCTACTTCAA CGACGCCCAA CGACAGGCCA CCAAGGACGC CGGCAAGATC 
GCCGGCCTGG ACGTGTTGCG CATCATCAAC GAGCCGACCG CGGCCGCGCT TGCCTATGGC 
CTCGACAAGA AGGAAGGCAA GACGATCGCC GTTTACGACC TTGGCGGCGG CACCTTCGAT 
ATTTCGGTTC TCGAAATCGG CGACGGCGTC TTTGAAGTGA AGTCGACCAA TGGCGACACC 
TTCCTTGGCG GCGAAGACTT CGACATGCGT CTGGTCGAAT ATCTTGCATC CGAGTTCAAG 
AAGGAGCAGG GAATCGACCT GAAGAACGAT AAGCTCGCTT TGCAGCGCCT GAAGGAAGCT 
GCCGAAAAGG CGAAGATCGA GCTTTCGTCC TCGCAGCAGA CCGAAATCAA CCTGCCGTTC 
ATCACCGCGG ACGCTTCCGG TCCGAAGCAC CTGACGATGA AGCTGTCACG CGCCAAATTC 
GAGAGCCTCG TCGACGACCT GATCCAGAAG ACCATCGCGC CGTGCAAGGC CGCGCTCAAG 
GATGCAGGCG TTTCGGCTGC CGAGATCGAC GAAGTCGTTC TCGTCGGCGG CATGACCCGC 
ATGCCGAAGG TCCAGGAAAC GGTGAAGCAA CTTTTCGGCA AGGAGCCACA TAAGGGCGTC 
AACCCGGATG AGGTCGTCGC CATGGGCGCC GCCATCCAGG CCGGCGTTCT GCAGGGCGAC 
GTCAAGGACG TGCTGCTGCT GGACGTTACC CCGCTCTCGC TCGGCATCGA AACGCTGGGC 
GGCGTCTTCA CCCGCCTGAT CGAGCGCAAC ACCACGATCC CGACCAAGAA GAGCCAGGTC 
TTCTCGACGG CCGACGACAA CCAGTCCGCC GTGACGATCC GCGTTTCCCA GGGCGAACGT 
GAAATGGCGG CCGACAACAA GCTGCTCGGC CAGTTCGATC TCGTCGGCAT TCCGCCGGCG 
CCTCGCGGCG TGCCGCAGAT CGAAGTCACC TTCGACATCG ATGCGAACGG CATCGTGCAG 
GTGTCTGCCA AGGACAAGGG CACGGGCAAG GAGCACCAGA TCCGCATTCA GGCCTCTGGT 
GGTCTTTCCG ACGCCGAGAT CGAGAAGATG GTCAAGGATG CCGAGGCCAA TGCGGAAGCC 
GACAAGAAGC GCCGCGAAGG CGTAGAGGCC AAGAACCAGG CCGAAAGCCT GGTTCATTCC 
TCGGAGAAAT CGCTACAGGA ACATGGCGAC AAGGTTTCCG AGACGGACCG GAAGGCCATC 
GAGGATGCGA TTGCAGCGCT GAAGAGCGCC GTCGAAGCTT CCGAGCCGGA CGCCGAGGAC 
ATCAAGGCCA AGACCAATAC GCTCATGGAA GTCTCCATGA AGCTCGGTCA GGCGATCTAT 
GAGGCTCAGC AGACGGAATC CGCCCATGCT GATGCCGCCG CCGACGCTAA GCGCTCCGGG 
GACGACGTGG TCGACGCCGA CTACGAGGAA GTCAAGGACG AGGACGACCG TAAGCGGTCG 
GCGTAA 

 

Protein sequence

MAKVIGIDLG TTNSCVSVMD GKDAKVIENA EGARTTPSMV AFTEDGERLV GQPAKRQAVT 
NPENTLFAIK RLIGRTFEDP TTQKDKGMVP YKIVKADNGD AWVEAHDKSY SPSQISAMIL 
QKMKETAESY LGEKVEKAVI TVPAYFNDAQ RQATKDAGKI AGLDVLRIIN EPTAAALAYG 
LDKKEGKTIA VYDLGGGTFD ISVLEIGDGV FEVKSTNGDT FLGGEDFDMR LVEYLASEFK 
KEQGIDLKND KLALQRLKEA AEKAKIELSS SQQTEINLPF ITADASGPKH LTMKLSRAKF 
ESLVDDLIQK TIAPCKAALK DAGVSAAEID EVVLVGGMTR MPKVQETVKQ LFGKEPHKGV 
NPDEVVAMGA AIQAGVLQGD VKDVLLLDVT PLSLGIETLG GVFTRLIERN TTIPTKKSQV 
FSTADDNQSA VTIRVSQGER EMAADNKLLG QFDLVGIPPA PRGVPQIEVT FDIDANGIVQ 
VSAKDKGTGK EHQIRIQASG GLSDAEIEKM VKDAEANAEA DKKRREGVEA KNQAESLVHS 
SEKSLQEHGD KVSETDRKAI EDAIAALKSA VEASEPDAED IKAKTNTLME VSMKLGQAIY 
EAQQTESAHA DAAADAKRSG DDVVDADYEE VKDEDDRKRS A