Gene Smed_3362 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3362 
Symbol 
ID5324246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3561585 
End bp3562544 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content64% 
IMG OID640792313 
ProductD-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 
Protein accessionYP_001329018 
Protein GI150398551 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.83049 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCCA AAAGCCCGGT GATCGTCGAC CTGAAATTCA TCCCCGAAGA GGTGGAGGCG 
GCCCTTGCAG GGGCCTTTCC CGACCGAGAG GTCATCGATC TCGCTGACCC GGTGCATCGG
GGGCGTGACC TGTCCGGCAT CGATTATGCC GTGGTCTGGA AATCCGCCCC CGACCTCTTT
TCGCGGGCAC CGGACCTCAA AGTGGTCTTT TCCGGCGGCG CCGGCGTCGA CCACGTGCTG
ACGCTTCCCG GCCTGCCCGA CGTGCCGCTG GTGCGCTTCG TCGATCGGAC GTTGACGACG
CGGATGAGCG AGTGGGTCGT AATGCAGTGC CTCCTGCATC TTCGCCAGCA CCACGCCTAC
GAGGCGCTTG CGAACAGGCA CGAATGGCGC GACCTCAGTC AGCCAGAGGC AGCCGACGTG
ACCGTCGGCA TCATGGGAAT GGGCGTGCTC GGCCAGGACG CCGCCCGCAA GCTCGCCGTC
ATGGGCTTCA AGGTGATCGG CTGGTCGCGA AGCAAGCGGG TGATCGAGGG TGTAGAGACC
TACGACGCTG CCGGACTGGA CGCATTTCTC GGCCAAACGG ATTTCCTCGT CGGCCTGCTG
CCGCTGACGC CGGAGACCAG AGGCATATTC AACGGCGCCC TTTTTGCCAA GCTCAGCCGC
CGAGGACCTT TCGGCGCGCC TGTTTTCATC AATGCAGGCC GGGGCGGCAG CCAGGTCGAG
GCCGATATCC TGGAATGCAT CGATTCCAGT ATGCTCGCAG GCGCCTCGCT CGACGTCTTC
GAACGGGAGC CGCTCCCGCA GGAAAGCCGC TTCTGGGACC TGCCGAACGT CTACGTGACC
CCGCATGTCG CAGCCTCGTC CGACGTCAGG GCCCTCTTCG TCCATGTAGA ACATCAGATC
GCGCGCTTCG AGAGCGGGCT TCCCCTGGAA CATGTGGTGG ATAAGGTAGC CGGCTACTGA
 
Protein sequence
MSAKSPVIVD LKFIPEEVEA ALAGAFPDRE VIDLADPVHR GRDLSGIDYA VVWKSAPDLF 
SRAPDLKVVF SGGAGVDHVL TLPGLPDVPL VRFVDRTLTT RMSEWVVMQC LLHLRQHHAY
EALANRHEWR DLSQPEAADV TVGIMGMGVL GQDAARKLAV MGFKVIGWSR SKRVIEGVET
YDAAGLDAFL GQTDFLVGLL PLTPETRGIF NGALFAKLSR RGPFGAPVFI NAGRGGSQVE
ADILECIDSS MLAGASLDVF EREPLPQESR FWDLPNVYVT PHVAASSDVR ALFVHVEHQI
ARFESGLPLE HVVDKVAGY