| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3361 |
|---|
| Symbol | |
|---|
| ID | 5324245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3560609 |
|---|
| End bp | 3561475 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640792312 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_001329017 |
|---|
| Protein GI | 150398550 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.957349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCGC CAATGCCAGA AGTTCTCGAT CGCCGTCTCA ATGCCTATCG CGAAGACCTC
GCGGAGGAGC GTCTGCGCGG CATCGTCGAG GCGAAGCGCT TCGTGGAAGG CACGCCGGCG
GCAGTGGCTG TGCCGGTGAC GCCGCTCCGT CCGAGGCCGG AGGCCGATTG CGGCACCGAT
ACCGAGCTGC TTTATGGCGA GACGCTGCGC ATACTCGACG TCGCCGGCGG ATGGGCGTGG
GTCAAATCCG ACCTCGACGG CTATGTCGGC TACGTACCGC AGGATCTGCT GAAGCCTGCG
CACTCCGCGG CAACGCACAT CGTCTCGGTG CCGCGGACAT TCGTCTATCG CGGCGCGGAT
CTGCGTTTTC CCCAGGTCCA TGCTCTTTCC ATGGGGAGCC GGGTTGAGGT CGTCGGGGAG
ACCGAGACGC GCGGCACGCG CTATTTTCTG CTGGAAGGCG GGCTGGCGAT CGTCGCCGAT
CATTGCATCC AGGCCGGCAA TCCGCTCACG GACGACTATG TCGCGGTCGC GTCCCGCTTT
ATCGAGACGC CTTATCTTTG GGGCGGCCGC TCCGGGTTCG GCATCGACTG TTCGGGCCTT
GTGCAACTCG CGATGCAGAT GACCGGGCGC AATGCGCCGC GCGACTCCGA TATGCAGGCA
AGGGACCTCG GCCGCGTCAT CGAGCGCGAG GGACTCACGC GCGGCGACCT CGTCTTCTGG
AAGGGCCATG TGGCGATCAT GGAAGACGAG AAGACGCTGA TACATGCCAA TGGCCACACG
ATGACGGTGG CGCGGGAAGG TCTCGAAGAC GCCATCCGGC GCATCGGCTG GCTGTATGCG
CAGCCGACGG GATACAGGCG GCCCTAG
|
|---|
| Protein sequence | MSSPMPEVLD RRLNAYREDL AEERLRGIVE AKRFVEGTPA AVAVPVTPLR PRPEADCGTD
TELLYGETLR ILDVAGGWAW VKSDLDGYVG YVPQDLLKPA HSAATHIVSV PRTFVYRGAD
LRFPQVHALS MGSRVEVVGE TETRGTRYFL LEGGLAIVAD HCIQAGNPLT DDYVAVASRF
IETPYLWGGR SGFGIDCSGL VQLAMQMTGR NAPRDSDMQA RDLGRVIERE GLTRGDLVFW
KGHVAIMEDE KTLIHANGHT MTVAREGLED AIRRIGWLYA QPTGYRRP
|
|---|
| |