| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3357 |
|---|
| Symbol | |
|---|
| ID | 5324241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3556584 |
|---|
| End bp | 3557567 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640792308 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001329013 |
|---|
| Protein GI | 150398546 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2064] Flp pilus assembly protein TadC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGGCT GGATAGAGAC GCTTACCGAT CCGAATATCA TCGTCGCGGT GCTGGTTTCG
ATGGCCGTGC TCGCTACCTT CTATTCGCTC GTGGCCCCCC TGCTCGAACG GGGAGACCTC
GCGAAACGGA TGAAATCGGT CGCAACCGAG CGCGAGCAGA TTCGTGCCCG CGAACGCGCC
CGTCTCAATA CCGAGGCGCC GACCGGCAGA GCGAGCCTGA GAACACAGCA CAACAGCTCG
GTACGCGAGG TCGTCGAGCG GTTGAACCTC CGCAAGGCCC TGGTGGACGA CAATACCGTC
AACCGCCTCA AGACGGCCGG CTTCCGCTCT CAGAACGCGC TAAACACTTT TCTCTTCGCC
CGCTTCTGCC TGCCGTTCCT GTTTCTGACC GTTTCGGTCC TCTACATCTT TGTGCTCGGG
AATTTTGCCG ACAAGCCGGT CATGGTCAGG GTGTCTTTCG CCATCGGTTT TGCCTATGTC
GGTTTCTACG CCCCCAACAT CTTCATCGCC AATGCGATCT CAAAGCGGCA GCACTCCATT
CGCCGCGCCT GGCCGGACGC CCTCGATCTC CTGCTTATCT GCGTCGAATC GGGTGTCTCC
ATGGAACTTG CCATGCGCCG CGTGGCCGAC GAAATCGCCG TCCAGTCGCA GCCGCTGGCG
GAGGAACTGG TGCTGACGAC GGCGGAGCTC TCTTTTCTGC CCGAAAGGCG CGTCGCGCTC
GAAAATCTGG GACGACGCAC GGGCCTCGAA GAGGTGAAAT CAGTCATGCA GGCCTTGATA
CAGGCCGATC GCTACGGCAC GCCCGTGGCC CAGGCGTTGC GCGTGCTGGC ACAGGAAAGC
CGCGATCAGC GCATGACCGC CGCGGAGAAG AAGGCCGCCG CCTTGCCTCC GAAGCTGACG
GTGCCGATGA TCCTGTTCTT CCTGCCGGTC CTCGTCGCCG TCATCCTGGG TCCCGCGGGG
ATACAGGTGG CGGATAAGTT TTAG
|
|---|
| Protein sequence | MDGWIETLTD PNIIVAVLVS MAVLATFYSL VAPLLERGDL AKRMKSVATE REQIRARERA
RLNTEAPTGR ASLRTQHNSS VREVVERLNL RKALVDDNTV NRLKTAGFRS QNALNTFLFA
RFCLPFLFLT VSVLYIFVLG NFADKPVMVR VSFAIGFAYV GFYAPNIFIA NAISKRQHSI
RRAWPDALDL LLICVESGVS MELAMRRVAD EIAVQSQPLA EELVLTTAEL SFLPERRVAL
ENLGRRTGLE EVKSVMQALI QADRYGTPVA QALRVLAQES RDQRMTAAEK KAAALPPKLT
VPMILFFLPV LVAVILGPAG IQVADKF
|
|---|
| |