Gene Smed_3346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3346 
Symbol 
ID5324230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3546580 
End bp3547164 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content62% 
IMG OID640792297 
Producthypothetical protein 
Protein accessionYP_001329002 
Protein GI150398535 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4961] Flp pilus assembly protein TadG 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGTGCA TGCATGCGCG TAGACAGTCG CCGTTCCGTA CCCTTCGCCG TCTGCTGCGG 
GATCGGCGCG GCGCCGGTGC CGTGGAATTC GCCATTGTCG CGCCGCTTCT GATTGCCGCC
TATATCGGCG CCTTCGAGCT TTCGCTCGGC TTCACCGTCG CGAGAAAGGT GTCGCGCGCC
TCGAGTGCGG TGAGCGATAT CGTCACCACC GGGCAGCAGG TGAACAAGGC CTTTCTGGAC
GATATGCGGA ACGTCGCTAA AAACATGTTG GTGCCCTATG ACAGCTCCGA CTACGAGCTC
AAAATCACCG GCATACAGGT GGACGGTACG ACGGAAGGCA GGGTCGCCTG GTCCCGGGCC
TGGTCGGATG CGAGCAATAG CGCCACGGTT CCCTACGCAC TCAATTCGGT CGTCAGCGTT
CCGGCCGATC TCGACGCGGT GAATGCCTTC GTCGTGCGAA CGGAACTCGT CGTGAACCAT
CAGCTTTCCC TGTTCGGCTC GGACGCCGGC GCCATGATCC CCCTTTCCCG GACCTCCTAC
TATCGTCAGC GCTTCGGCAC GACCATCAAA TGCACGGACT GCTGA
 
Protein sequence
MGCMHARRQS PFRTLRRLLR DRRGAGAVEF AIVAPLLIAA YIGAFELSLG FTVARKVSRA 
SSAVSDIVTT GQQVNKAFLD DMRNVAKNML VPYDSSDYEL KITGIQVDGT TEGRVAWSRA
WSDASNSATV PYALNSVVSV PADLDAVNAF VVRTELVVNH QLSLFGSDAG AMIPLSRTSY
YRQRFGTTIK CTDC