| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3338 |
|---|
| Symbol | |
|---|
| ID | 5324222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3538714 |
|---|
| End bp | 3539847 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640792289 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001328994 |
|---|
| Protein GI | 150398527 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.945315 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.666399 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCC CTTATGCGAA ACTCCCGGGA TGGGTGGAAT ATGGCCTCAT CCCGCTGATC
AACCTTGCCG TCGCTTTTCT CGTCGCCGGT CTCGTCGTTC TTCTCGTCGG CGAAAACCCG
CTTGAAGCCG CCTATCATCT CATCAATGGT GCTTTCGGCC GCGGCGAATA TATCGGATTC
ACGCTCTATT ACGCAACGAC CTTCATCTTC ACCGGTCTCG CGGTGGCAGT CGCCTTTCAT
TCAGGGCTTT TCAATATAGG CGGCGAGGGT CAGGCCTATG TCGGGGGCAT CGGTGTGGCG
CTCGCTTGCC TCTGGCTCGA TCAAATGATG CCCTGGTATG TGGTCTTTCC GCTGGCCATC
GTCGGCTCCG TCTTCTTCGG CGCGCTCTGG GCGTTCCTGC CGGGCTGGCT GCAGGCCAGG
CGCGGCAGCC ATATCGTCAT CACCACCATC ATGTTCAATT TCATTGCATC GAGCCTGATG
GTCTACCTTC TGACGCGGGT GCTGAAACCA CTTGGCTCTA TGGCGCCGCA GACGCGGACG
TTCGCCGAGG GAGGGCAATT GCCGAAGCTC GACTGGCTGT TGTCGATCTT CGGGCTGAAT
ATCGGTACGG CACCGTTCAA CATCTCCTTC CTGCTGGCGC TGGCCGCAGC CTTCGCCGTA
TGGGTGCTGA TCTGGCGCAC CAGGCTCGGC TACGAAATGC GCACCATGGG GCACAGCCCG
TCGGCAGCAC GTTACGCCGG TATCAGCGAA AGCCGCATCA CCGTCGTCGC CATGATGATG
TCCGGCGGCC TCGCCGGCAT GATGGCGCTG AACCCGATCA TGGGCGAGCA GTTCCGCATG
CAGCTCGACT TCGTGCAAGG CGCGGGCTTC GTCGGCATCG CGGTGGCGCT GATGGGACGC
TCGCATCCGG GCGGCATCAT CCCCGCCGCG ATCCTCTTCG GCGTTCTCTA TCAGGGCGGC
GCCGAGATCG CCTTCGAGAT GCCTTCGATC TCGAGGGACA TGATCGTGAT CATCCAGGGT
CTCGTCATTC TCTTTGCCGG CGCGCTCGAG AACATGTTCC GGCCGGCGAT CACGCGCGTT
TTCGCGGCGC GCGGCCAGCG CGCGGCTGCG CTCGTGCAGA CCAAGGGAGC CTGA
|
|---|
| Protein sequence | MSTPYAKLPG WVEYGLIPLI NLAVAFLVAG LVVLLVGENP LEAAYHLING AFGRGEYIGF
TLYYATTFIF TGLAVAVAFH SGLFNIGGEG QAYVGGIGVA LACLWLDQMM PWYVVFPLAI
VGSVFFGALW AFLPGWLQAR RGSHIVITTI MFNFIASSLM VYLLTRVLKP LGSMAPQTRT
FAEGGQLPKL DWLLSIFGLN IGTAPFNISF LLALAAAFAV WVLIWRTRLG YEMRTMGHSP
SAARYAGISE SRITVVAMMM SGGLAGMMAL NPIMGEQFRM QLDFVQGAGF VGIAVALMGR
SHPGGIIPAA ILFGVLYQGG AEIAFEMPSI SRDMIVIIQG LVILFAGALE NMFRPAITRV
FAARGQRAAA LVQTKGA
|
|---|
| |